Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04696 ATGAAGATTCCAAGTTCTTCTTCTCTGGGTTTATTTCTAGGGTTTCTGTTACTTTCGTTGACGCCATCGTCAATGGCCAAATTCGTGGTGGAGAAGAACAGCTTAAGGGTCACGTCGCCTGATAGTATCAAGGGAACATACGATAGCGCGATTGGCAACTTTGGAATACCTCAATATGGTGGTAGTATGGCTGGTAACGTTGTGTTTCCTAAGGAGAATCAGAAGGGTTGTAAGGAGTTTGATGATTCTGGAATTTCATTCAAATCTAAGCCTGGTGCTCTTCCCACAATCGTTTTGCTCGATCGTGGAAATTGCTTCTTTGCTTTGAAGGTGTGGAATGCCCAGAAGGCTGGAGCTTCCGCTGTTCTTGTTGCGGATGATAttgaagaaaaattaataaccatGGACACACCTGAAGAGGATGGATCATCTGCAAAATATATAGAGAACATAACAATACCATCAGCTCTCATTGAAAAGAGTTTTGGTGGAAAGTTAAAGAGTGCCATAAGTAGTGGGGAGATGGTCAACGTAAATCTTGATTGGAGAGAGGCTGTCCCCCACCCAGATGATCGTGTGGAGTATGAACTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGATATGTTGATGGAATTTGTGAAGGATTTTAAGGGTGCGGCACAAATATTGGAGAAGGGTGGTTATACTCAGTTTACACCCCACTATATAACTTGGTACTGTCCTCAGGCATTCACGTTAAGTAAGCAGTGCAAGTCTCAGTGCATTAACCATGGAAGATATTGTGCACCAGATCCTGAGCAAGATTTCAGCACTGGTTATGACGGGAAAGATGTGGTTATTGAAAACTTGAGGCAGTTGTGTGTTTTCAAGGTtgcaaatgaaacaaaaaagcCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATCAGGTGCCCTATGAAGGAGAAAAAATACAACAAGAAATGTGCAGATGCTGTTATTGAATCACTCGGTCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAGACGCCGATTCCGAAAATTCTGTTTTGAAAGAAGAGCAAGATGCCCAAGTTGGAAAGGGATCACGAGGTGACGTTACCATATTGCCTACTCTAGTTGTCAACAGTCGACAGTATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTTCTGGTTTTGAAGAAACTACTGAGCCAGCTGTTTGTTTGAGCAGCGATGTGGAGACAAATGAGTGCTTGGAGAACAATGGTGGTTGTTGGTTGGATAAAGGAGCTAACATAACTGCATGCAAGGATACTTTCCGTGGGCGAGTATGTGAGTGCCCCTTGGTAGATGGTGTGCAGTTCAAAGGAGATGGTTATACGACATGCGAAGCTAGTGGACCAGGACGGTGCAAGATAAACAATGGAGGTTGTTGGCATGAAGCCCGCAATGGACATGCATTTTCTGCTTGTTCGGATAATGGAGGGGTTAAATGCGAGTGTCCTGCAGGGTTTAAAGGTGATGGTGTTAAAAATTGTGAAGACATTGATGAATGCAAAGACAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACCTGGGGCAGCTATAACTGCACTTGTAGTGGGGATCTTCTCTATATCAGGGACCAGGATACCTGCATAAGTAAAACTGCTGCTAATCAGGGAGGAAAGTCTGCTTGGGCTGCATTTTGGGTCATTGTAGTCGGCTTAGTTTTGGCCGCTTCAGGGGCTTACCTCATCTACAAATATAGAATAAGGTCATACATGGATTCTGAAATAAGGGCCATCATGGCACAGTATATGCCTTTGGATAGCCAAGGAGAAGTTGTAAATCATGTTAACGATGAAAGAGCATGA 1899 0.4265 MKIPSSSSLGLFLGFLLLSLTPSSMAKFVVEKNSLRVTSPDSIKGTYDSAIGNFGIPQYGGSMAGNVVFPKENQKGCKEFDDSGISFKSKPGALPTIVLLDRGNCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFGGKLKSAISSGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIKKIERCMGDPDADSENSVLKEEQDAQVGKGSRGDVTILPTLVVNSRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSDVETNECLENNGGCWLDKGANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHEARNGHAFSACSDNGGVKCECPAGFKGDGVKNCEDIDECKDKKACQCPECSCKNTWGSYNCTCSGDLLYIRDQDTCISKTAANQGGKSAWAAFWVIVVGLVLAASGAYLIYKYRIRSYMDSEIRAIMAQYMPLDSQGEVVNHVNDERA 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04696 632 Gene3D Laminin 524 562 - -
Tsu01g04696 632 Pfam Complement Clr-like EGF-like 502 522 IPR026823 -
Tsu01g04696 632 Pfam PA domain 64 163 IPR003137 -
Tsu01g04696 632 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 15 611 - -
Tsu01g04696 632 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 611 - -
Tsu01g04696 632 MobiDBLite consensus disorder prediction 349 369 - -
Tsu01g04696 632 CDD PA_VSR 53 180 - -
Tsu01g04696 632 SUPERFAMILY PA domain 60 150 IPR046450 -
Tsu01g04696 632 ProSitePatterns EGF-like domain signature 2. 503 517 IPR000742 -
Tsu01g04696 632 MobiDBLite consensus disorder prediction 349 366 - -
Tsu01g04696 632 Gene3D Laminin 412 468 - -
Tsu01g04696 632 CDD EGF_CA 519 547 - -
Tsu01g04696 632 SMART egfca_6 519 561 IPR001881 GO:0005509
Tsu01g04696 632 ProSitePatterns Calcium-binding EGF-like domain signature. 519 545 IPR018097 GO:0005509
Tsu01g04696 632 Gene3D Laminin 473 523 - -
Tsu01g04696 632 Gene3D - 25 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04696 Tsu-Chr1 54282337 54288194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04696 26 632 Miscellaneous Gene Families AT2G14740 84.185 0.0 1088
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04696 - - gmx:100803958 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04696 01 54282337 54288194 Tsu01g04696 01 54282337 54288194 ECH