Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04691 ATGTTCATGAATGAGTTTAACACCGTTGAATATAGTGGAGATCAGTTTGCCAGCCCAGCCAATTACCTCAGGAAACTTAAGGAGATTCAGCAATTTCCAGGAACTGCTGGAATGCCAATGGCTATAGGGTTGCAATGCCATTTTGCAAGGGGCATCCCAAATCTTGCTTACATGAGGTCAGGACTAGATCTTCTCGGTGCAACTGGACTTCCTATATGGCTCACAGAAACGGGTGTGGATGCGCAGCCAAATCAGTGTGTGAAAGAACCTAAGAGGGCACAATATGGAGGTGGAATTGTAGTAAATTCAGGATTTGATCACAACATAAAAGGATGGACAGTGTTTGGAAATGGAACAATCGAGAAAGGAACATCAAATGATGGAAATACATTCATTGTAGCCAGCAACAGAACACAACCATTGGATAGTTTTTCACAAAAGGTCCAACTGAAGCAAGGaataatatatactttttcTGCTTGGTTTCAGCTCAGTGAAGGAAGTGATATTGTGTCAGTTGTATTTAGAATAAATGGAAGTGATTTGGTGCAAGGTGGCCATGTTATAGCAAAGCATGGATGCTGGTCTCTTCTAAAAGGTGGCATAGTTGCAAATTATACAAGCCCTGCTGAGATTCTTTTTGAGAGTGAGAATCCAACAGTGGAGTTATGGGCTGATAGTGTTTCCTTACAACCATTCACCATAAAGCAATGGAGATCACACCAAGACAATAGCATTGAAAGGGTACGTAAGAGTAAGGTGAGATTCCAGGTAACTCATCTAAACGAAACAACATTGGAAGGAGCAAAAGTTGTCATCAAACAAACAAAGCCAAATTTCCCATTTGGATGTGCGATGAATAGTCACATCCTCACAAACATTAAGTACCAGAAATGGTTTGTGTCAAGATTCAAATACACAACTTTCACTAACGAGATGAAGTGGTATAGTACAGAGAAAATTCAAGGCCAAGAAAACTATACTATTGCAGATGCCATGCTTAAATTCGCCAAACAAAATGGCATTTCTGTGCAATACTTTGAAGAGATACTGAGAGAGGCTTATTCTCATCCAGCTGTTCAAGGGATTATATTGTTTGAAGGTCCAGCACAAGCCGGTTTCGTCTATACACTCCTTGCAGACAGGAATTTTCGAAATACTCCAAGTGGAGACGTTGTGGACAAGCTAATTAAAGAGTGGGGAACTGGACCTAAAACAACCATAGCAGATAGTAGAGGAATTGTAGATATTTCATTACATCATGGAGATTATGATGTTACTATTACACATCCTCTAACTCAATACtccaaaaaattgaatTGTGTGAAAGAACCTAAGAGGGCACAATATGGAGGTGGCATTTTAGTAAATCCAGGATTTGATCACAACATAAAAGGATGGACAGTGTTTGGAAATGGAACAATCCAGAAACGAACATCAAATGATGGAAATACATTCATTGTTGCCAGCAACAGAACACAACCATTGGATAGTTTTTCCCAGAAGGTCCAACTGAAGAAAGGATTAATATATACTTTTTCTGGTTGGTTTCAGTTGAGTGAAGGAAGTGACATTGTGTCGGctgtatttaaaataaatggaagTGAACTGGTGCGAGGTGGCCATGTGATAGCCAAGCATGGATGCTGGTCTCTGCTAAAAGGTGGCATAGTTGCAAACTTTTCAAGCCCTGCTGAGATTCTTTTTGAGAGCGAGAATTCAACTGTGGAATTATGGGTTGATAGTGTCTCCTTACAACCATTCACCAAAGAGCAATGGAGATCACAGCAAGACAAGAGCATTGAGAGGGTACGTAAGAGCAGGGTGAGATTCCAGGTAACTCATCCAAACAAAACAGCATTGGAAGGAGCAACAGTTGTTATCAAACAAACAAGGGCAGATTTCCCTTATGGATGTGCGATGAACCATCATATCCTCACAAATAGCGATTACCAGAAATGGTTTGTGTCAAGATTCAAATACACAACTTTCACTAACGAGATGAAGTGGTATAGTACCGAGAAAATTCAAGGCCAGGAAAACTATACTATCCCTGATGCCATGCTGAAATTCGCCAAAGAAAATGGCATTTCTGTCAGAGGCCATAACATTTTGTGGGACAGTATAAGACGCCAGCCTCATTGGGATTTGACCCTGTCTCCTAACGAATTACGAGAAGCAGCCGCAAAAAGAATGAATTCTGTGGTCTTAAGGTATAAGGGACAACTGATTGCATGGGACGTGGTGAATGAGAATCTCCACTTCAGCTTTTTTGAGGACAAACTCGGCGAAAATGTCTCTGCAGTATATTATTCAGCAGCTTACCATCTTGATCCGATTACCAAAATGTTCATGAATGAGTATAACACCATTGAATACAGTAATGATAAGGTTGCCAGCCCAGCCAATTATATCAAGAAACTTAAGCAGATTCAGCAATTTCCAGGAATTGATGGAATATCATTGGCCATAGGGTTGCAAGGCCACTTTGCAAGTGGCCAGCCGAACATTGCTTACATGAGGTCAGGTCTAGATCTTCTTGCTGCAACTGGACTTCCTATATGGCTCACAGAAACCAGTGTGGATCCTCAGCCAAATCAGGCAGAGTACTTTGAAGAGATACTAAGAGAGGGTTACTCACATCCTGCTGTTCAAGGGATTGTAATGTTTGTGGGTCCAGCAGCGGCCGGTTTCAACAATACGGCCGGTTTCAACAATACATCACTCGCagatgaaaattttcaaaatactcCAACTGGAGACGTTGTGGACAAGCTGATTCGTGAGTGGGGAACTGGCCCTCATACAGCCATAGCAGACAGTAGAGGAATTATAGATATTTCACTACATCATGGGGATTATGATGTGACTGTTACACATCCTCTAACCCAATACTCCAAAAATTTGAATGTAAGTGTAAGGAAAAGATTTTCACCGGATACCATCCATGTGAAAATGCATGCCTAA 2967 0.4041 MFMNEFNTVEYSGDQFASPANYLRKLKEIQQFPGTAGMPMAIGLQCHFARGIPNLAYMRSGLDLLGATGLPIWLTETGVDAQPNQCVKEPKRAQYGGGIVVNSGFDHNIKGWTVFGNGTIEKGTSNDGNTFIVASNRTQPLDSFSQKVQLKQGIIYTFSAWFQLSEGSDIVSVVFRINGSDLVQGGHVIAKHGCWSLLKGGIVANYTSPAEILFESENPTVELWADSVSLQPFTIKQWRSHQDNSIERVRKSKVRFQVTHLNETTLEGAKVVIKQTKPNFPFGCAMNSHILTNIKYQKWFVSRFKYTTFTNEMKWYSTEKIQGQENYTIADAMLKFAKQNGISVQYFEEILREAYSHPAVQGIILFEGPAQAGFVYTLLADRNFRNTPSGDVVDKLIKEWGTGPKTTIADSRGIVDISLHHGDYDVTITHPLTQYSKKLNCVKEPKRAQYGGGILVNPGFDHNIKGWTVFGNGTIQKRTSNDGNTFIVASNRTQPLDSFSQKVQLKKGLIYTFSGWFQLSEGSDIVSAVFKINGSELVRGGHVIAKHGCWSLLKGGIVANFSSPAEILFESENSTVELWVDSVSLQPFTKEQWRSQQDKSIERVRKSRVRFQVTHPNKTALEGATVVIKQTRADFPYGCAMNHHILTNSDYQKWFVSRFKYTTFTNEMKWYSTEKIQGQENYTIPDAMLKFAKENGISVRGHNILWDSIRRQPHWDLTLSPNELREAAAKRMNSVVLRYKGQLIAWDVVNENLHFSFFEDKLGENVSAVYYSAAYHLDPITKMFMNEYNTIEYSNDKVASPANYIKKLKQIQQFPGIDGISLAIGLQGHFASGQPNIAYMRSGLDLLAATGLPIWLTETSVDPQPNQAEYFEEILREGYSHPAVQGIVMFVGPAAAGFNNTAGFNNTSLADENFQNTPTGDVVDKLIREWGTGPHTAIADSRGIIDISLHHGDYDVTVTHPLTQYSKNLNVSVRKRFSPDTIHVKMHA 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04691 988 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 622 926 IPR001000 GO:0004553|GO:0005975
Tsu01g04691 988 Pfam Glycosyl hydrolase family 10 276 345 IPR001000 GO:0004553|GO:0005975
Tsu01g04691 988 Pfam Glycosyl hydrolase family 10 631 885 IPR001000 GO:0004553|GO:0005975
Tsu01g04691 988 Gene3D Glycosidases 624 932 - -
Tsu01g04691 988 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 1 86 - -
Tsu01g04691 988 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 438 984 - -
Tsu01g04691 988 SUPERFAMILY (Trans)glycosidases 345 403 IPR017853 -
Tsu01g04691 988 Gene3D - 101 231 - -
Tsu01g04691 988 SUPERFAMILY (Trans)glycosidases 266 345 IPR017853 -
Tsu01g04691 988 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 82 344 - -
Tsu01g04691 988 PANTHER GLYCOSYL HYDROLASE 345 440 IPR044846 GO:0004553|GO:0005975
Tsu01g04691 988 PANTHER GLYCOSYL HYDROLASE 82 344 IPR044846 GO:0004553|GO:0005975
Tsu01g04691 988 SUPERFAMILY Galactose-binding domain-like 96 231 IPR008979 -
Tsu01g04691 988 Gene3D Glycosidases 1 100 - -
Tsu01g04691 988 SUPERFAMILY (Trans)glycosidases 2 116 IPR017853 -
Tsu01g04691 988 Gene3D - 442 588 - -
Tsu01g04691 988 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 345 440 - -
Tsu01g04691 988 SUPERFAMILY Galactose-binding domain-like 451 587 IPR008979 -
Tsu01g04691 988 Gene3D Glycosidases 257 348 - -
Tsu01g04691 988 PANTHER GLYCOSYL HYDROLASE 1 86 IPR044846 GO:0004553|GO:0005975
Tsu01g04691 988 PANTHER GLYCOSYL HYDROLASE 438 984 IPR044846 GO:0004553|GO:0005975
Tsu01g04691 988 SMART glyco_10 668 926 IPR001000 GO:0004553|GO:0005975
Tsu01g04691 988 SUPERFAMILY (Trans)glycosidases 621 934 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04691 Tsu-Chr1 54224622 54247666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04691 435 973 Glycoside Hydrolase AT4G33840 51.661 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04691 - - mtr:MTR_1g106770 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04691 01 54224622 54247666 Tsu01g04691 01 54224622 54247666 ECH