Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04682 ATGTTGCAAACCCTAGTAATACCCGCAAGCTTCCGCTTCGCGAATCGAATATCCCTCCGAAGAAGCTTTAGCTTTCGTTCATTCACTTCATCCTCCGATTATGAAGATCAGTCTCGTGGTGGCCTCCCTCGTTTCTACTCCGAAATTCTTCCTCTTTCCAAGGCATTTTCTCTTATACTTCCTCTATTCTATGGTAATGTTATTCGGGTAAAAGGCGATGAAGTCTGGCACATGACAAAAGTATTGAGGTTGTCCACAAATGATAGGATACAGCTCTTCAACGGGAAAGGAGGTTTAGTAGAAGGGTCCATACAGAACATTGACCGCACTGGAGTGGATTTTGTTGCACTGACTGATCTGAAATTAATGCCTCCGCAGAATTTTCAATTGCATGTATTTGCTGGTTTTGGTACTCTTAAGGGTGGCCGTGCTGACTGGCTTGTAGAGAAGTGTACAGAACTTGGAGCCAGTAGTGTTACTCCGCTATTGACTGAACGTTCTCCGTCAATCTCAGAAAATCGGGTGGACAGACTGGAACGTGTCATTTTAGCAGCATCTAAACAATGTCAAAGACTGCACGAAATGATCCTGAAACCTCCTGTAGAGATTGGTGATATTTTGCATCTTATTGCACAATCAAAGCTATCTCTTGTTGCAACAGCAGAAGCAGCTCCTGTTCTAAATGCATTGACATCATTGGAAAAGGAAACTAATGGCTTAATCATAGTTGGACCAGAGGGCGATTTCACCGAGAAAGAAGTAAATATGATGATGGAAGCAGGTGCTAAAGCTGTTAATCTTGGGTCCCATCGTCTGCGAGTTGAAACTGCCACAATAGCACTTCTTGCTACTGTCATGTTATGGTCCGACTCTCAGCAAACTTCAGTCTCTTGA 894 0.434 MLQTLVIPASFRFANRISLRRSFSFRSFTSSSDYEDQSRGGLPRFYSEILPLSKAFSLILPLFYGNVIRVKGDEVWHMTKVLRLSTNDRIQLFNGKGGLVEGSIQNIDRTGVDFVALTDLKLMPPQNFQLHVFAGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMILKPPVEIGDILHLIAQSKLSLVATAEAAPVLNALTSLEKETNGLIIVGPEGDFTEKEVNMMMEAGAKAVNLGSHRLRVETATIALLATVMLWSDSQQTSVS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04682 297 Gene3D - 59 296 IPR029026 -
Tsu01g04682 297 Pfam RNA methyltransferase domain 129 285 IPR046886 -
Tsu01g04682 297 SUPERFAMILY PUA domain-like 62 115 IPR015947 -
Tsu01g04682 297 SUPERFAMILY alpha/beta knot 128 289 IPR029028 -
Tsu01g04682 297 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 67 286 IPR006700 GO:0006364|GO:0008168
Tsu01g04682 297 CDD RsmE-like 130 283 IPR046886 -
Tsu01g04682 297 Pfam RNA methyltransferase PUA domain 71 115 IPR046887 -
Tsu01g04682 297 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 42 294 IPR006700 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04682 K09761 - gmx:100777253 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04682 01 54166904 54169935 Tsu01g04682 01 54166904 54169935 ECH