Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04489 ATGTCAATGGCTTTCTGTCACAGACTCGACAACTTCATCATCTCTTCTTTTAAACCCCAAAATTCATATACCCATCTTTCAATTCAATCTTCTTTCAATCTCCCATCTCATTCTTCCTTCAAAGTTCAAAACTTTCCTTTCAGGGTTCGCTATAATCCAATTATTAGAGCCacttcttcatcatcctcttctcCTCCTACAACCATTGCTGAACCTAATGGCATTAagatTAATTCTATTCCTACAAAACCTATAGAAGGACAAAAAACTGGTACAAGTGGACTACGAAAGAAGGTGAAAGTGTTTATGCAAGAAAATTACCTTGCAAATTGGATTCAGGCACTGTTTAATTCATTGCCTCCTGAGGATTACAAAAATGGAGTCTTGGTGTTGGGAGGTGATGGTCGATACTTTAATCGAGAAGCTGCACAGataataatcaaaattgcTGCTGGAAACGGTGTTGGAAAAATACTGGTCGGAAAGGAAGGGATATTATCAACACCGGCCGTTTCTGCTGTTATAAGGAAGAGGCAGGCAAATGGTGGATTTATTATGAGTGCCAGCCATAATCCCGGCGGTCCTGAATATGATTGGGGTATTAAGTTTAATTACAGTAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATTTACGGAAACACCCTATCTATTTCTGAGATAAAGATCGCCGATATTCCTGATGTCAACTTATCAAATGTTGGGGTTACAAACTTTGGAAGCTTCAGTGTGGAAGTAATAGACCCAGTTTCTGATTATCTGGAACTATTGGAGACAGTATTTGATTTTCAGCTAATCAAAGGTCTTATTTCACGGCCAGATTTTAGGTTTACATTCGATGCCATGCATGCAGTTGCTGGTGCTTATGCAACACCCATCTTTGTTGATAAACTTGGTGCTAGTCCGGATTCAATTTCAAATGGAATACCTTTGGAAGATTTTGGACATGGTCATCCCGATCCTAATCTAACATATGCGAAGGATCTTGTTAACATTATGTATGCTGAAAACGGACCTGATTTCGGAGCTGCCAGTGATGGTGATGGAGATAGAAATATGATTTTAGGATCGAGTTTCTTTGTAACTCCTTCAGACTCTGTAGCAGTTATTGCAGCCAATGCAAAAGAAGCGATTCCATACTTCAAGGACAGTGTTAAGGGTCTTGCACGATCAATGCCAACAAGTGGTGCTCTAGATAGAGTTGCTGAAAAGTTGAACCTCCCTTTCTTCgagGTTCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATCTGTCGATTTGCGGTGAAGAGAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAGGACGGAATCTGGGCTGTATTAGCTTGGCTTTCTATTATTGCTCACCGcaacaaagacacaaaacccgGGGAAAAATTGGTATCTGTATCTGATGTTGTGAAGGAGCACTGGGCAACCTACGGTAGAAATTTCTTTTCTAGATATGACTACGAGGAATGTGAATCTGAAGGCGCCAATAAGATGGTAGAGTACCTACGAGAGCGTTTGTCTGAGAGCAAGGCAGGTGATAAGTACGGAAGTTATGTCCTCCAGTTTGCAGATGATTTTACATACACTGATCCTGTAGATGGAAGTGTGGTATCAAAACAAGGGGTTCGGTTTGTTTTCACGGATGGTTCAAGGATTATTTATCGTTTATCAGGAACGGGTTCTGCTGGTGCAACTGTTAGAGTGTATATTGAACAGTTTGAACCAGATGTTTCTAAGCACGACCTCGATGCTCAAATTGCCTTGAAACCATTAATAGACTTAGCACTATCCGTGTCGAAGCTCAAAGACTTCACAGGAAGAGAGAAGCCTACAGTCATCACTTAA 1896 0.3972 MSMAFCHRLDNFIISSFKPQNSYTHLSIQSSFNLPSHSSFKVQNFPFRVRYNPIIRATSSSSSSPPTTIAEPNGIKINSIPTKPIEGQKTGTSGLRKKVKVFMQENYLANWIQALFNSLPPEDYKNGVLVLGGDGRYFNREAAQIIIKIAAGNGVGKILVGKEGILSTPAVSAVIRKRQANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADIPDVNLSNVGVTNFGSFSVEVIDPVSDYLELLETVFDFQLIKGLISRPDFRFTFDAMHAVAGAYATPIFVDKLGASPDSISNGIPLEDFGHGHPDPNLTYAKDLVNIMYAENGPDFGAASDGDGDRNMILGSSFFVTPSDSVAVIAANAKEAIPYFKDSVKGLARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGNLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDTKPGEKLVSVSDVVKEHWATYGRNFFSRYDYEECESEGANKMVEYLRERLSESKAGDKYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDLDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04489 631 Gene3D - 73 264 - -
Tsu01g04489 631 CDD PGM1 80 631 - -
Tsu01g04489 631 Gene3D - 265 367 - -
Tsu01g04489 631 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 371 494 IPR005846 GO:0005975|GO:0016868
Tsu01g04489 631 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 183 192 IPR016066 GO:0000287
Tsu01g04489 631 SUPERFAMILY Phosphoglucomutase, first 3 domains 77 289 IPR016055 GO:0005975|GO:0016868
Tsu01g04489 631 SUPERFAMILY Phosphoglucomutase, first 3 domains 259 368 IPR016055 GO:0005975|GO:0016868
Tsu01g04489 631 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 260 362 IPR005845 GO:0005975
Tsu01g04489 631 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 55 631 IPR045244 GO:0004614|GO:0005975
Tsu01g04489 631 Gene3D - 368 466 - -
Tsu01g04489 631 SUPERFAMILY Phosphoglucomutase, first 3 domains 355 501 IPR016055 GO:0005975|GO:0016868
Tsu01g04489 631 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 88 227 IPR005844 GO:0005975|GO:0016868
Tsu01g04489 631 PRINTS Phosphoglucomutase/phosphomannomutase family signature 182 196 IPR005841 GO:0005975|GO:0016868
Tsu01g04489 631 PRINTS Phosphoglucomutase/phosphomannomutase family signature 282 301 IPR005841 GO:0005975|GO:0016868
Tsu01g04489 631 PRINTS Phosphoglucomutase/phosphomannomutase family signature 347 362 IPR005841 GO:0005975|GO:0016868
Tsu01g04489 631 PRINTS Phosphoglucomutase/phosphomannomutase family signature 318 331 IPR005841 GO:0005975|GO:0016868
Tsu01g04489 631 SUPERFAMILY Phosphoglucomutase, C-terminal domain 496 631 IPR036900 GO:0016868|GO:0071704
Tsu01g04489 631 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 554 606 IPR005843 GO:0016868|GO:0071704
Tsu01g04489 631 PANTHER PHOSPHOGLUCOMUTASE, CHLOROPLASTIC 55 631 - -
Tsu01g04489 631 Gene3D - 477 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04489 Tsu-Chr1 52538270 52543328 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04489 K01835 - gmx:100802730 1138.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04489 01 52538270 52543328 Tsu01g04489 01 52538270 52543328 ECH