Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04486 ATGGCGGCACAGTTTACCCCCTCAGGTAAATCTGATGATCTCGCAACAAAAGGATGTAACGAAACAAGTGATCTGGTTGTTTGTTTTGGTGAACTGTTAATAGATTTTGTGCCAACGGTGGGTGGAGTGTCTCTAGCTGAAGCGCCTGCTTTCAAGAAAGCTCCTGGTGGTGCTCCTGCGAATGTCGCAGTTGGCATCTCTAAGTTGGGGGGTTCATCTGCATTTATAGGCAAGGTTGGAGCAGATGAATTTGGGTATATGTTGGCTGatattttaaagcaaaataagGTCGATACATCTGGTATGCGGTATGATTCTAATGCAAGAACTGCATTGGCTTTTGTTACACTTAGGGCTGATGGTGAGCGCGAGTTCTTGTTTTTCCGAAATCCTAGTGCTGATATGCTTCTGGATAAGTCAGAGCTTGATCGAAACCTCATTGAGAAGGCTAAAATATTCCATTATGGTTCCATCAGTTTGATTGACGAGCCATGCAAATCAGCTCATCTTGCTGCTTTGAGAATTGCTAAAGACTCCGGTTGCATCCTCTCATATGATCCGAATTTGAGATTGGCACTATGGCCATCAGCTGAGGCTGCTCGGGATGGTATAATGAGCATATGGGAACTAGCCGATGTCATAAAGATCAGTGAAGAAGAGATTACCTTTTTGACTGGTGGtgatgatccttatgatgatgatgttgtatTAAATAAGCTTTTTCACCCTCATATCAAGCTCCTAATTGTTACCGAAGGGTCAGAGGGTTGTAGATATTACACCAAGAATTTTAAGGGCAGAGTTGCAGGTGTCAAAGCTAAAGCTGTTGACACAACCGGTGCTGGCGACGCATTTGTTAGCGGGTTTCTATACAACTTAGCTTCTGATCCAAGTATACTCGAGGACGAAGAGCATCTGCGAAAAGCGCTATATTTTGCCAATGTATGTGGTGCGATCACAGTGACAGAGAGAGGGGCAATTCCTGCACTACCTACAAAAGACGCCGTCCTGCAATTTGATGCGAAATAG 1029 0.4266 MAAQFTPSGKSDDLATKGCNETSDLVVCFGELLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISKLGGSSAFIGKVGADEFGYMLADILKQNKVDTSGMRYDSNARTALAFVTLRADGEREFLFFRNPSADMLLDKSELDRNLIEKAKIFHYGSISLIDEPCKSAHLAALRIAKDSGCILSYDPNLRLALWPSAEAARDGIMSIWELADVIKISEEEITFLTGGDDPYDDDVVLNKLFHPHIKLLIVTEGSEGCRYYTKNFKGRVAGVKAKAVDTTGAGDAFVSGFLYNLASDPSILEDEEHLRKALYFANVCGAITVTERGAIPALPTKDAVLQFDAK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04486 342 PANTHER HEXOKINASE FAMILY MEMBER 15 340 - -
Tsu01g04486 342 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 56 80 IPR002173 GO:0016773
Tsu01g04486 342 Gene3D - 22 342 IPR029056 -
Tsu01g04486 342 Pfam pfkB family carbohydrate kinase 25 332 IPR011611 -
Tsu01g04486 342 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 277 290 IPR002173 GO:0016773
Tsu01g04486 342 PANTHER CARBOHYDRATE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 15 340 - -
Tsu01g04486 342 SUPERFAMILY Ribokinase-like 26 339 IPR029056 -
Tsu01g04486 342 CDD bac_FRK 25 327 - -
Tsu01g04486 342 PRINTS Ribokinase signature 206 221 IPR002139 GO:0016301
Tsu01g04486 342 PRINTS Ribokinase signature 51 70 IPR002139 GO:0016301
Tsu01g04486 342 PRINTS Ribokinase signature 248 259 IPR002139 GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04486 Tsu-Chr1 52511849 52515254 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04486 K00847 - gmx:100818404 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04486 01 52511849 52515254 Tsu01g04486 01 52511849 52515254 ECH