Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04480 ATGGGTTGGTTCTTGGCACAATTTATATGGACATTTCTTGCTGGAAGCTTGTTCTTTAATGGTTTATCTTATTCTTATAAAGCTCCAAAGTACAGATTTATCAAAGAAGCAACATTTGCTCCTCCAATCTTAAGATATGATTATATAGTGATAGGTGGAGGATCATGTGGTTGTCCACTAGCAGCAACACTTTCACATGGTGGAAAAGTTTTAGTCCTTGAAAGAGGAGGTTCACCATATACAAATCCAGAACAAATCAAGATAAATAAGTTTGTTCATTCTCTTGCTAACACAAGTCCTTCATCATTTTCCCAACAATTCATATCAACCGACGGCGTCCTCAATGCTCGTGCTCGTGTCTTAGGCGGTGGTTCTGTCTTGAATGCTGGATTCTACTCAAGGGCTAGCTATAAGTACATAAGAGAATCTGGTTGGAATGAAACTTTGGCTAAGAGTGCATATGAATGGGTTGAAAAAAAAGTTGCTTTTGAGCCTCCAATGATGCAATGGCAATCAGCAGTTAGGGATGGTTTACTTGAAGCAGGGGTTTTGCCTTACAATGGTTTTACTTTTGATCATTTATATGGGACTAAGGTTggagggtcaatttttgataaGGAGGGTCATAGACACACTGCAGCTGATTTGTTAGAGTATGCTGATCCAACAAGAATTTCTGTTTATTTGCATGCCACAGTGCAGAAGATACTGTTTAAGTATAATGCAAAAAAAAAGAGGCCACAAGCTTATGGAGTGATATTCAAAGATGCATTGGGAATCATACATAGAGCATACATAAGCTCCAAAGTTAAGAATGAAATAATAGTATCCGCTGGTGCAATCGGAAGTCCACAGTTACTGATGCTGAGTGGTATTGGTCCAGCTAAACATCTTAAGGCACATAGAATCAAAGTGGTTTTGGATCAGCCTTTGGTTGGTCAAGGGATGGCAGATAATCCAATGAATATTCTAGTTGTTCCTTCTCCTTTACCTGTTGAAGTTTCTCTAGTTGAAACAGTTGGAATCACTAAGTTTGGTAGCTACATTGAAGCAATTAGTGGATTAAACTTAGGTAATTCTTGGTCTCACAGGCTTAGAGGGATTTTTGAATTTGTGTCAAACCAGAGTGGCCTACCGCACGAGTTCACACCAGAAGCCATGAAAAGTTTTGCAAACATAATTCGATCATTAGACAATTCAACTCTCAAAGGAGGAGTCATACTAGAAAAGATAATGGGACCAAGATCAACAGGTCACCTAGAACTCTTAACAACTAATCCCAATGATAATCCATCAGTTACATTTAACTATTTCAAAGATCCAGAAGACTTGAGAATGTGTGTGGAAGGCATGAAAACCGTCATAAATGTGATAAACTCAAAAGCATTCTCAAGATTCCGGTATCCTAACATGACTGTCAAAGATCTAATAGACTTGATGTTATACATGCCagtgaatttgaatttgaggCCAAAACATCGTAATGCTTCATTTTCTTTGGAACAATATTGCATTGACACTGTCTTAACAATTTGGCATTATCATGGAGGTTGCCAATATGGTAAAGTTGTTGATCATAATTATAAAGTCATTGGTGTAGAAGCTCTTAGAGTAATTGATGGATCGATTTTTTATCGCTCACCAGGGACTAATCCTCAAGCTACTGTAATGATGCTTGGAAGGTATATGGGACAAAAGATTATAAAGAAAAGACTCTCTCACAGGAGGAAGTGA 1734 0.3714 MGWFLAQFIWTFLAGSLFFNGLSYSYKAPKYRFIKEATFAPPILRYDYIVIGGGSCGCPLAATLSHGGKVLVLERGGSPYTNPEQIKINKFVHSLANTSPSSFSQQFISTDGVLNARARVLGGGSVLNAGFYSRASYKYIRESGWNETLAKSAYEWVEKKVAFEPPMMQWQSAVRDGLLEAGVLPYNGFTFDHLYGTKVGGSIFDKEGHRHTAADLLEYADPTRISVYLHATVQKILFKYNAKKKRPQAYGVIFKDALGIIHRAYISSKVKNEIIVSAGAIGSPQLLMLSGIGPAKHLKAHRIKVVLDQPLVGQGMADNPMNILVVPSPLPVEVSLVETVGITKFGSYIEAISGLNLGNSWSHRLRGIFEFVSNQSGLPHEFTPEAMKSFANIIRSLDNSTLKGGVILEKIMGPRSTGHLELLTTNPNDNPSVTFNYFKDPEDLRMCVEGMKTVINVINSKAFSRFRYPNMTVKDLIDLMLYMPVNLNLRPKHRNASFSLEQYCIDTVLTIWHYHGGCQYGKVVDHNYKVIGVEALRVIDGSIFYRSPGTNPQATVMMLGRYMGQKIIKKRLSHRRK 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04480 577 Gene3D - 163 510 - -
Tsu01g04480 577 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 4 571 - -
Tsu01g04480 577 SUPERFAMILY FAD-linked reductases, C-terminal domain 316 517 - -
Tsu01g04480 577 PANTHER OSJNBA0019K04.7 PROTEIN 4 571 - -
Tsu01g04480 577 PIRSF Alcohol_oxidase 34 576 IPR012132 GO:0050660
Tsu01g04480 577 Pfam GMC oxidoreductase 414 561 IPR007867 GO:0016614
Tsu01g04480 577 ProSitePatterns GMC oxidoreductases signature 2. 279 293 IPR000172 GO:0016614|GO:0050660
Tsu01g04480 577 Gene3D - 46 560 IPR036188 -
Tsu01g04480 577 SUPERFAMILY FAD/NAD(P)-binding domain 44 570 IPR036188 -
Tsu01g04480 577 Pfam GMC oxidoreductase 46 320 IPR000172 GO:0016614|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04480 Tsu-Chr1 52455350 52458431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04480 7 571 Miscellaneous Gene Families AT5G51950 59.756 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04480 - - gmx:100780453 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04480 01 52455350 52458431 Tsu01g04480 01 52455350 52458431 ECH