Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04479 ATGGGTTCCTATAGAGGTGATTCAGCATCATGGTATTGTGCAATAGCTTTATTGGGTATAATATTGTTAGGATCAATAAGAGAAAGTACTGTGGCTGAATTAGAACAAGTAAGAGGGAACCATCTTGGTGATCACAAAGCATGTGATGAGATATATGTGGTTGGAGAAGGTGAAACACTTAACACAATCAGTGAAAAATGTGGTGACCCGTATATTGTGGAGCGGAATCCACATATCCATGACCCGGATGATGTTTTCCCTGGTCTTGTTATCAGAATCATCACACCAAACAATACTAGGAAATTGTTGAAGACATAG 318 0.3899 MGSYRGDSASWYCAIALLGIILLGSIRESTVAELEQVRGNHLGDHKACDEIYVVGEGETLNTISEKCGDPYIVERNPHIHDPDDVFPGLVIRIITPNNTRKLLKT 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04479 105 Gene3D LysM domain 44 102 IPR036779 -
Tsu01g04479 105 CDD LysM 51 93 IPR018392 -
Tsu01g04479 105 PANTHER LYSM DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 7 104 - -
Tsu01g04479 105 PANTHER EMBRYO SAC 1 7 104 - -
Tsu01g04479 105 Pfam LysM domain 52 93 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04479 Tsu-Chr1 52451504 52452968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04479 - - qsu:112037248 142.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04479 01 52451504 52452968 Tsu01g04479 01 52451504 52452968 ECH