Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04477 ATGTCCAACTCGATGCAGGTAGTTGTGGAGAAAAAGATAATGCGTGAAAAAAATCTAACCAGGCATGATTTGGGCCGTGAAAAATTTATCTCAGAGGTTTGGGAATGGAAAAACAAGTACGGGGGCACAATTTTGCAACAATTACGCCGATTAGGAGCATCTCTGGATTGGTCTCGTGAGTGCTTCACAATGGATGACAAAAGATCTAAGGCTGTGACGGATGCTTTTGTGAGGCTTTACAAGCAAGGCCTTGTCTATAGGGACTTACGGTTAGTAAATTGGGATTGTCTGTTGCGAACAGCAATATCTGATATCGAGGTGGATTATATTGATATAAAAGAAAGGACCCTGCTAAAGATTCCAGGATACGACAAACCTGTTGAATTTGGTGTTTTAACAAAGTTTGCTTACACACTGGAAGGGAACCTAGGTGAAATTGTTGTTGCCACAACTAGGATAGAAACTATGCTTGGTGACACTGCAATTGCCGTACATCCTACTGATGACCGATACAGTAAATTTCATGGAAAATTTGCTGTTCACCCATTTAATGGCAGAAAACTTCCTATAATTTGTGATGCTATTCTTGTTGATCCAAAGTTTGGGACAGGTGCTGTTAAGATTACACCAGCCCATGATCCTAATGATTTTGAGGTTGGAAAACGTCACAACCTTGAATTTATTAATGTTTTCACCGACGATGGGAAAATAAATTCCAATGGTGGCTCTGAATTTTTGAACATGCCACGATTTCAAGCCCGGGAAGCAATAACTGAAGCATTAAAAAAGAAGGATCTTTATAGAGGTTCTGAAAACAATGAGATGCGCCTTGGTGTATGTTCAAGAAGCAATGATGTTATAGAGCCCATGATAAAGCCGCAGTGGTATGTTAATTGCAGTGATATCGCAAAGGAAGCTCTTCATGCTGTCACGGATGAGGAAAACAAAAGGGTAGAGATTATTCCAAGACAATATGTGGCTGATTGGAAGAGATGGCTAGAAAACATACGTGATTGGTGCATTTCACGGCAGCTATGGTGGGGTCACCAAATTCCTGCGTGGTATGTCACTTTAGAGGATGATATACTGCAGGAATTGGGTGCTTACAATGACCATTGGGTAGTGGCAAGAAATGAAGAGGAAGCCCGGGATGAGGCTAACCAAAGGTATAGTGGAAAGAAGTTTCATTTAAGCCGGGACCCCGACGTTCTTGATACATGGTTTTCTTCTGGTCTGTTCCCATTAACTGTGCTGGGATGGCCTGATGACACAGAAGACCTGAAGGCATTCTATCCAACTTCTGTCTTGGAAACTGGCCATGATATCCTCTTTTTCTGGGTTGCTCGTATGGTGATGTTAGGAATGAAGTTGGGTGGTGATGTTCCTTTTAGCAAGATTTATTTGCACCCAATGATTCGTGATGCGCATGGGCGCAAGATGTCCAAGTCTTTGGGGAATGTTATTGACCCCATTGAGGTGATAAATGGTATATCACTAGAAGGTCTACATAAGAGGTTAGAAGGAGGTAACCTTGACCCTAAAGAACTAGCTGTTGCAATAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATTGATGAATGTGGTGCTGATGCCCTCCGTTTTGCCCTGGTCTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGTAATAAATTATGGAATGCAGTACGATTTGCTATGAGCAAGCTCGGAGATAATTATAAACCTCCTGCAAATTTGAATCCAGATGCTCTCCCATTTAGCTGCAAGTGGATACTATCTGTGTTGAATAAAACCATATTGAAAACATCCAAGTCTCTAGAATCATATGAGTTCTCGCAAGCTACCACTGCTGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTGTTCATTGAAGTGATCAAGCCTTACTTTTCTGGCAATGATTTTGCTTCCGAAAGATGCTCAGCTCAAGATACTTTGTGGTTTTGTCTGGACAATGGTCTGCGATTGCTTCATCCTTTTATGCCTTTTGTCACGGAAGAATTGTGGCAACGCCTTCCTTCGCCCAAGGAATCTAAGAGAGAAGAGTCAATCATGATAGCTGATTATCCATCAGTTATAGagAACTGGAATAATGAAAGGGTAGAGAAAGAGATGGACCTCATTGAGTCTACTGTGAAGTCTCTCAGGTCACTGGCAAAAGAGAGACGTGACAGGCGACCGGCTTTTGTTCTTTGCAAAAAATCGGAGGTTGCAGAGATTATTAACAGTCATCGATTGGAGATTACTACACTAGCTAATCTATCCTCTTTAACCGTAATCACCGACATTAAAGCGGTTCCATCATCTGGATACGCCAATACTGTCGTAAATGAAAGCCTTTCTGTTTATTTAGAGCTTCAAGGAATTAATTCTGCAGAAGCGGAGGCTGGAAAGATGAAGAAGATAGAAAATCTGAAAGGGCAAATAGACAGATTAGAGAAGAGTATGAATATTCCAGGTTATGAAGAGAAGGTTCCGCAAGAAGTTCGATCCATGAATGCGGAGAAGCTAGAATCCTTAATCTCTCAATTGAATGCGTTCAACTTGATTGATGATTAA 2619 0.4139 MSNSMQVVVEKKIMREKNLTRHDLGREKFISEVWEWKNKYGGTILQQLRRLGASLDWSRECFTMDDKRSKAVTDAFVRLYKQGLVYRDLRLVNWDCLLRTAISDIEVDYIDIKERTLLKIPGYDKPVEFGVLTKFAYTLEGNLGEIVVATTRIETMLGDTAIAVHPTDDRYSKFHGKFAVHPFNGRKLPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGKINSNGGSEFLNMPRFQAREAITEALKKKDLYRGSENNEMRLGVCSRSNDVIEPMIKPQWYVNCSDIAKEALHAVTDEENKRVEIIPRQYVADWKRWLENIRDWCISRQLWWGHQIPAWYVTLEDDILQELGAYNDHWVVARNEEEARDEANQRYSGKKFHLSRDPDVLDTWFSSGLFPLTVLGWPDDTEDLKAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFSKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGISLEGLHKRLEGGNLDPKELAVAIEGQKKDFPNGIDECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDNYKPPANLNPDALPFSCKWILSVLNKTILKTSKSLESYEFSQATTAVYSWWQYQLCDVFIEVIKPYFSGNDFASERCSAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPKESKREESIMIADYPSVIENWNNERVEKEMDLIESTVKSLRSLAKERRDRRPAFVLCKKSEVAEIINSHRLEITTLANLSSLTVITDIKAVPSSGYANTVVNESLSVYLELQGINSAEAEAGKMKKIENLKGQIDRLEKSMNIPGYEEKVPQEVRSMNAEKLESLISQLNAFNLIDD 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04477 872 TIGRFAM valS: valine--tRNA ligase 5 857 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tsu01g04477 872 Pfam Anticodon-binding domain of tRNA ligase 601 741 IPR013155 GO:0004812|GO:0006418
Tsu01g04477 872 Gene3D - 804 869 IPR037118 -
Tsu01g04477 872 Gene3D - 128 273 IPR009008 GO:0002161|GO:0006418
Tsu01g04477 872 Gene3D HUPs 306 554 IPR014729 -
Tsu01g04477 872 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 127 277 IPR009008 GO:0002161|GO:0006418
Tsu01g04477 872 Coils Coil 815 835 - -
Tsu01g04477 872 CDD Anticodon_Ia_Val 555 692 IPR033705 -
Tsu01g04477 872 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 567 821 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tsu01g04477 872 CDD ValRS_core 6 555 - -
Tsu01g04477 872 SUPERFAMILY Nucleotidylyl transferase 5 565 - -
Tsu01g04477 872 PRINTS Valyl-tRNA synthetase signature 431 449 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tsu01g04477 872 PRINTS Valyl-tRNA synthetase signature 165 182 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tsu01g04477 872 PRINTS Valyl-tRNA synthetase signature 400 421 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tsu01g04477 872 PRINTS Valyl-tRNA synthetase signature 282 295 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tsu01g04477 872 Gene3D HUPs 3 117 IPR014729 -
Tsu01g04477 872 PANTHER BNAA08G31530D PROTEIN 5 868 - -
Tsu01g04477 872 Coils Coil 718 738 - -
Tsu01g04477 872 Pfam tRNA synthetases class I (I, L, M and V) 5 556 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tsu01g04477 872 Gene3D - 560 742 - -
Tsu01g04477 872 PANTHER VALYL-TRNA SYNTHETASES 5 868 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04477 Tsu-Chr1 52429864 52437713 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04477 K01873 - gmx:100798111 1535.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04477 01 52429864 52437713 Tsu01g04477 01 52429864 52437713 ECH