Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04471 atgatgaagatgaagaacatgGTCAATAATGGAGGTTCGGGAACCGAACCTAGAGGTATGGAGTGGGAGATGAGACCAGGTGGCATGTTGGTTCAGCGTCGAACCGATGGTGACTCGGACCGGAAACCGGTTCAGCCACCGACAATTAAAGTCCGGGTCAAATATGGTTCAACTTATCATGAAGTCAACATTAGTTCAATAGCAACATTTGGGGAATTGAAGAAAATGTTAACTGGTCCAACTGGTTTACACCACCAAGAccaaaagatattttataaaGACAAGGAAAGGGATTCAAAGGCATTTCTTGACATAGTAGGAGTCAAAGATAAATCCAAGTTGGTGGTAATGGAAGATCCTATTAGTCAAGAGAAGAGGTACTTAGAAATGAGGAAGAATGTAAAGATGGAAAGAGCTGCAAAATCTATTTCAGAAATTAGTTTGGAAGTAGATAGGCTTGCAGGGCAgGTGTCTGCTATTGAAACAATAATTAGTAAAGGTGGGAAAGTTGTAGAGACAGATGTGCTTAGTTTGATTGAGAAATTGatgaatcaattaattaaattggatGGTATAGTGGCTGATGGGGATGTTAAACTGCAGAGGAAAATGCAGgtaaaaagagttcaaaagtATGTTGAAACCTTGGATATGTTGAAAGTTAAGAACAAACATTCTAATGGAGGTCAAGTAGCAAAGAAGAAGCTTCAACAAAAGCATTCAAATGCTAAAAGATTGGCTCCAATTGAAGAGCAACCACAAGAAGACATATCAAATgaaaatcataaatcacaacCAAATTTGGAGCAACAAAAACAAGCACCACAAAAGAACTCAAATGGTCATTCTCTAGTATTTCAACAAATGCAACACAAACCTTCTATGAATTCTGCCTCAGAAGTTGTAGTTACAACAAAATGGGAAACATTTGATTCTCTACCACCATTAATTCCAGTTACATCAACATCTTCATCCAGCTCAACCACCAATAATTCAGTTCCTCCCAAGTTCAATTGGGAATTctttgaataa 1032 0.3498 MMKMKNMVNNGGSGTEPRGMEWEMRPGGMLVQRRTDGDSDRKPVQPPTIKVRVKYGSTYHEVNISSIATFGELKKMLTGPTGLHHQDQKIFYKDKERDSKAFLDIVGVKDKSKLVVMEDPISQEKRYLEMRKNVKMERAAKSISEISLEVDRLAGQVSAIETIISKGGKVVETDVLSLIEKLMNQLIKLDGIVADGDVKLQRKMQVKRVQKYVETLDMLKVKNKHSNGGQVAKKKLQQKHSNAKRLAPIEEQPQEDISNENHKSQPNLEQQKQAPQKNSNGHSLVFQQMQHKPSMNSASEVVVTTKWETFDSLPPLIPVTSTSSSSSTTNNSVPPKFNWEFFE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04471 343 ProSiteProfiles Ubiquitin domain profile. 47 117 IPR000626 GO:0005515
Tsu01g04471 343 MobiDBLite consensus disorder prediction 313 334 - -
Tsu01g04471 343 PANTHER BAG FAMILY MOLECULAR CHAPERONE REGULATOR 3 6 329 - -
Tsu01g04471 343 MobiDBLite consensus disorder prediction 315 334 - -
Tsu01g04471 343 SUPERFAMILY Ubiquitin-like 37 123 IPR029071 -
Tsu01g04471 343 ProSiteProfiles BAG domain profile. 142 220 IPR003103 GO:0051087
Tsu01g04471 343 PANTHER BCL2-ASSOCIATED ATHANOGENE 6 329 IPR039773 GO:0051087
Tsu01g04471 343 MobiDBLite consensus disorder prediction 259 280 - -
Tsu01g04471 343 Gene3D - 48 118 - -
Tsu01g04471 343 MobiDBLite consensus disorder prediction 244 258 - -
Tsu01g04471 343 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g04471 343 Pfam BAG domain 143 218 IPR003103 GO:0051087
Tsu01g04471 343 SMART BAG_1 142 220 IPR003103 GO:0051087
Tsu01g04471 343 Gene3D BAG domain 119 224 IPR036533 GO:0051087
Tsu01g04471 343 SUPERFAMILY BAG domain 102 223 IPR036533 GO:0051087
Tsu01g04471 343 MobiDBLite consensus disorder prediction 223 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04471 Tsu-Chr1 52377462 52380312 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04471 - - mtr:MTR_1g101440 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04471 01 52377462 52380312 Tsu01g04471 01 52377462 52380312 ECH