Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04467 atgGTTCAACTTCAACGTAAATTTGAACAATGGATAATGAAGAGACAGCTAGATGGTGGGTTGAGCATGCTTTATTTCGTTTTGCCTACCATCGTGAACGAATTCGATCATTTTGAAGCCTTACTTCATGTTCGCGAAGAGTTTCGTGATCTTACCGAGCAAATGATAGCCCGGACATCCACGATCGGCCCTATCGCAGGAGTTCATGAAGCCGATGAGTTCATATACAGGGTCGAGATGTACTTAGTCGGACTACATGATCATTTGGTTCATGGTGTGCATCTTGTGCATTTTCAGAATATTAGAGTAGGTTCATGTGGTGGCCGTATTCCccttcataatgtttttttgaatatggataataataatttggatGAAAATTGGCATGGTGAGTGGTTTCTTTATGGAGCTGAAAGAGGCTATTTACGCGAAGCACATCTTAATCTTAGGGTGTTGGCTGATCAACGGGGGACTACTAGGAATTTAGCGATGCTCAGATCTATAGTCCATAATACCCAAGTGCGATTTGTAGTAAAGATGTTGAGGGATGATGGCACGGCCCGGTATGTTTTCTGTGAATACTTTGTGGTTGTGATAAATGGAGCAGCTAAGGAAATAGGAAGAGCAGCAGTGTTAGCTGTGACAAATGCAAGAGGAATGGAAGTAGCTGGAGCTGTTGATACTCACCTTGTTGGAGAAGATATTGGACAGGTTTGTGGCATGGAAGAGCCCCTTGAAATACCTATACTAAATGACCTTACTATGGTTTTGGGCTCTATATCTCAGTCCAAGGCCACAGCAGTTGTAATTGATTTCACAGACCCTTCCACAGTATATGACAATGTAAAACAGGCAACAGCATTTGGCATGAAAAGCGTAGTTTACGTGCCCCAAATCGAATTAGATACAGTTGCAGCATTATCTGCATTCTGTGAGAAGGCCAGCATGGGTGTCTTGATTGCACCAACCCTTTCCATAGGATCGATATTATTGCAGCAGGCTGCAATTTCAGCTTCCTTCCATTATCGCAACATCGAAATCGTGGAATCCAAGGCTAATGCAAATGATCTTCCATCAGCTGATGCAAACCAAATTGCAAACAATCTTTCTAACCTCGGCCAAATCTATAACAGAGAAGATTCTTCAACAGATGTCTTGCAGGCCATTATATTCCGTTCCACAATATAA 1188 0.4116 MVQLQRKFEQWIMKRQLDGGLSMLYFVLPTIVNEFDHFEALLHVREEFRDLTEQMIARTSTIGPIAGVHEADEFIYRVEMYLVGLHDHLVHGVHLVHFQNIRVGSCGGRIPLHNVFLNMDNNNLDENWHGEWFLYGAERGYLREAHLNLRVLADQRGTTRNLAMLRSIVHNTQVRFVVKMLRDDGTARYVFCEYFVVVINGAAKEIGRAAVLAVTNARGMEVAGAVDTHLVGEDIGQVCGMEEPLEIPILNDLTMVLGSISQSKATAVVIDFTDPSTVYDNVKQATAFGMKSVVYVPQIELDTVAALSAFCEKASMGVLIAPTLSIGSILLQQAAISASFHYRNIEIVESKANANDLPSADANQIANNLSNLGQIYNREDSSTDVLQAIIFRSTI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04467 395 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 197 349 IPR036291 -
Tsu01g04467 395 ProSiteProfiles YDG domain profile. 63 221 IPR003105 -
Tsu01g04467 395 Pfam SAD/SRA domain 62 180 IPR003105 -
Tsu01g04467 395 PANTHER DIHYDRODIPICOLINATE REDUCTASE-LIKE PROTEIN CRR1, CHLOROPLASTIC 195 386 - -
Tsu01g04467 395 PANTHER DIHYDRODIPICOLINATE REDUCTASE 195 386 IPR023940 GO:0008839|GO:0009089
Tsu01g04467 395 Gene3D - 195 351 - -
Tsu01g04467 395 Pfam Dihydrodipicolinate reductase, N-terminus 197 322 IPR000846 GO:0008839|GO:0009089
Tsu01g04467 395 SUPERFAMILY PUA domain-like 56 202 IPR015947 -
Tsu01g04467 395 Gene3D - 61 194 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04467 Tsu-Chr1 52343571 52348309 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04467 K16908 - gmx:100782083 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04467 01 52343571 52348309 Tsu01g04467 01 52343571 52348309 ECH