Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04446 ATGGGTAAGCAAAAACAACAAGTCATTTCCCGTTTCTTCGCTCCTAAACCCAAACCCCCTCCACCGACAACCGATCCACctccatcttcttcctctccTCGTCCCACCCCTTCCACTCCCAAAATCTCCGCCACCGTCAATTTCTCTCCATCCAAACGCCGCCTTATCTCTCAACTAACATCGTCCCCTAACAAACAACCCAAACTCTCCCCACACACCAACAACCCTGCACCATCTCCATCCAATCCCTCCCTCCACCAACGCTTCCTCGAGAAACTTCTAGAACCTTCTGCTCCAGACCCACAACTTCCTTCATCTTCCAAACCGGTAAAGTTTACTCCTTTAGAGCATCAGGTAGTTGAACTCAAAGCTAAATACCCTGATGTTCTTTTAATGATTGAAGTTGGTTACAAGTATAGGTTTTTCGGCGAAGATGCTGAGAATGCTGCTAGAGTTTTAGGTATATATGCACACATGgatcataattttttaactgCTAGTATACCAACTGTTCGATTAAATGTCCATGTGAGGAGGCTTGTAAGTGCAGGGTATAAGGTTGGCGTTGTTAAGCAGACTGAGACTGCTTCCATTAAGGCCCATGGTTTGAACCGGGCTGGCCCATTTTGTCGAGGCTTGTCAGGGTTGTACACCAAGGCGACGTTGGAGGCAGCTCAGGATTTGGGAGGAGGGGAAGACGAGTGTGGGAGTGTGAGTAACTATTTGCTTTGTGTTGTGGAGAAGAGCATTTTGGGAGAGAAAAAACCTAATTGTGGTGTGGAAGGTGGTTGTGATGTGAGGATTGGAATTGTTGGTGTGGAGATATCGACCGGAGATGTTGTTTATGGagagtttaatgataattttttgaGGAGTGAACTCGAGGCTGTTGTTGCGAGCTTGTCTCCTGCGGAGTTACTTCTTGGAGATCCTCTTTCCAAACAAACCGAGAAGttattactgGCTTTTGCTGGACCCTCCTCAAATGCCCGTGTGGAGCGTGCCTCACGAGATTGCTTCACTGATGGAGGTGCTTCTGCTGAAGTTATGACCTTGTATGAGAACATGCATGTTGACAGTCCACCAGATTCAATGCAAAGCAATGAACTGGCTGAGCATAGAAGTCAGCAGATGGTAGTTAAGGAGGTGATGAACCTGCCAGATTTGGCGGTTGAAGCTTTGGCCTTAACTATTCGCCATTTGAAGGGATTTGGTTTTGAAAGAATTCTGTGCTCAGGTGCTTTAAGGCCCTTCATAAGCAATACAGAGATGACTCTCTCAGCCAATGCACTTCAACAACTGGAGGTTTTACAAAATAACAGTGATGGATCTGAGAGTGGTTCCTTGCTGCAAATTATGAACCAGACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTATCACATCCATTGTGCGATCAATCCTTGATTGCTGCCCGTCTTAATGCTGTATCTGAAATCGCAGAGTCCATGGGAACTTGTAATGGCATGAAGAATCTTGAATGTTTTGAGGAAGATTCTGATGTAGCAATTATGCAACCTGCTTTAGCAAACATACTTTCATCAGTTTTGGCATCCCTGGGCCGGGCACCTGATATACAGCGAGGGATTACTAGAATTTTCCATCGCACTGCTACCCCATCTGAGTTTATTGCCATTATTCAAGCTGTTTTGTCTGCTGGAAAACGGCTTCAGCAACTTAACATAGGAGAGGGGGATAGcgataatagtaataataaattgcGCTCTGAATTGTTGAAGAAGTTAATTTCAACCGCTTCCTCTGCAAGTGTTATTGGTAATGCTGCAAAGATGTTGTCATCTTTAAATAAAGACTTTTCTTATGAAGGAGATCTGACAAATATGTTCATTGCAACTGAGGGACAATTTCCAGAGGTAATTACAGCTAGAAAGGATTTTCAGATGGCAGCGGAACAATTAGATTCTTTGATTGACTTGTACCGCAAACGGCTTGGAATGCGAAATTTGGAATTTATGTGTGTTTCTGGTATAACTCACTTGATAGAGCTATCAACTGATGTAAAAGTGCCTTCAAATTGGGTTAAGGTAAATGGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGATGGGTTATCGTTAGCGAAAGAGAAGCTTACCGTTGCCTGTCGAGCTGCTTGGGATAGCTTTCTGAGGGACTTCAGTAAACACTATGCGGAGTTCCAAGCTTCTATTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTCCGCCCTGTTTTTGTAGACGATCATGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACTAccttacaaaataattttgtccCAAATGATACAAACATGCATGCGGATAGAGAGTACTGTCAAATTGTAACTGGACCCAATATGGGGGGGAAAAGTTGCTATGTTCGCCAAGTGGCTCTGATCACTCTCATGGCCCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGTATGTCCTGGACGGGATCTACACTCGGATGGGTGCTTCTGACAGTATTCAGTTAGGGAGAAGCACCTTCCTAGAAGAATTGAGTGAGACATCACATATACTACATAGATGTACAGGACGTTCACTTGTTATACTTGATGAGCTTGGGAGAGGTACAAGTACACATGACGGCATGGCCATTGCTTATGCGACATTACATTATCTTCTGAAGCAGAGGAAAAGCTTGGTCCTCTTTGTCACTCATTATCCAAAGATTGCCAGTCTGGAAACTGAATTTCCAGGATCTGTAGCAGCATATCACATGTCCCATCTGACCTCACACAATGATGCGAGTAGAAAATCCAATGATCATGAAAATGTCACTTATCTATATAAGCTCGTACCTGGTGTTTCAGAGAGGAGTTTTGGTTTTAAGGTTGCCCAGCTTGCACAGTTACCATCACATTGCATTAGCCGAGCTATTGTCATGGCTTCCAAACTAGAAGCACTAGTAAACAGTAGAATGCGTGGTAGATCAGAAAAGCAATTGTTGTTGGATGCACCTGTTATTGATCAAGAGCATGAACCACATGATTGTCCACATCAAGAATTTGGTAGAGCTTATAAGGAATTCTATTCAAACTTAAAAGCTGCAATATTAGATGATGACCATGCAAAAAGCTTTCAACTTTTAGAGAATGCTAGAAGCATTGCAAAGACATTAGTTAGCAGATGA 3267 0.4218 MGKQKQQVISRFFAPKPKPPPPTTDPPPSSSSPRPTPSTPKISATVNFSPSKRRLISQLTSSPNKQPKLSPHTNNPAPSPSNPSLHQRFLEKLLEPSAPDPQLPSSSKPVKFTPLEHQVVELKAKYPDVLLMIEVGYKYRFFGEDAENAARVLGIYAHMDHNFLTASIPTVRLNVHVRRLVSAGYKVGVVKQTETASIKAHGLNRAGPFCRGLSGLYTKATLEAAQDLGGGEDECGSVSNYLLCVVEKSILGEKKPNCGVEGGCDVRIGIVGVEISTGDVVYGEFNDNFLRSELEAVVASLSPAELLLGDPLSKQTEKLLLAFAGPSSNARVERASRDCFTDGGASAEVMTLYENMHVDSPPDSMQSNELAEHRSQQMVVKEVMNLPDLAVEALALTIRHLKGFGFERILCSGALRPFISNTEMTLSANALQQLEVLQNNSDGSESGSLLQIMNQTLTIFGSRLLRHWVSHPLCDQSLIAARLNAVSEIAESMGTCNGMKNLECFEEDSDVAIMQPALANILSSVLASLGRAPDIQRGITRIFHRTATPSEFIAIIQAVLSAGKRLQQLNIGEGDSDNSNNKLRSELLKKLISTASSASVIGNAAKMLSSLNKDFSYEGDLTNMFIATEGQFPEVITARKDFQMAAEQLDSLIDLYRKRLGMRNLEFMCVSGITHLIELSTDVKVPSNWVKVNGTKKTIRYHPPEVVTALDGLSLAKEKLTVACRAAWDSFLRDFSKHYAEFQASIQALAALDCLHSLAILSRNKGYVRPVFVDDHEPVQIQICSGRHPVLETTLQNNFVPNDTNMHADREYCQIVTGPNMGGKSCYVRQVALITLMAQVGSFVPASSAKLYVLDGIYTRMGASDSIQLGRSTFLEELSETSHILHRCTGRSLVILDELGRGTSTHDGMAIAYATLHYLLKQRKSLVLFVTHYPKIASLETEFPGSVAAYHMSHLTSHNDASRKSNDHENVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRMRGRSEKQLLLDAPVIDQEHEPHDCPHQEFGRAYKEFYSNLKAAILDDDHAKSFQLLENARSIAKTLVSR 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04446 1088 ProSitePatterns DNA mismatch repair proteins mutS family signature. 892 908 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu01g04446 1088 Gene3D - 767 1040 IPR027417 -
Tsu01g04446 1088 SMART DNAend 444 794 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tsu01g04446 1088 SUPERFAMILY DNA repair protein MutS, domain III 428 764 IPR036187 -
Tsu01g04446 1088 PIRSF Msh6 103 1064 IPR017261 GO:0006298|GO:0030983
Tsu01g04446 1088 SUPERFAMILY DNA repair protein MutS, domain I 106 221 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tsu01g04446 1088 SMART mutATP5 811 1009 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu01g04446 1088 Pfam MutS domain I 113 223 IPR007695 GO:0005524|GO:0006298|GO:0030983
Tsu01g04446 1088 MobiDBLite consensus disorder prediction 36 72 - -
Tsu01g04446 1088 Pfam MutS domain V 814 1012 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu01g04446 1088 Gene3D MutS, connector domain 236 423 IPR036678 GO:0005524|GO:0006298|GO:0030983
Tsu01g04446 1088 MobiDBLite consensus disorder prediction 14 35 - -
Tsu01g04446 1088 Gene3D - 426 759 - -
Tsu01g04446 1088 Pfam MutS domain II 240 317 IPR007860 GO:0005524|GO:0006298|GO:0030983
Tsu01g04446 1088 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 91 1084 - -
Tsu01g04446 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 767 1012 IPR027417 -
Tsu01g04446 1088 MobiDBLite consensus disorder prediction 1 85 - -
Tsu01g04446 1088 Pfam MutS domain III 429 759 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tsu01g04446 1088 Gene3D DNA repair protein MutS, domain I 104 230 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tsu01g04446 1088 Gene3D - 609 735 - -
Tsu01g04446 1088 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 91 1084 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04446 Tsu-Chr1 52142746 52153054 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04446 K08736 - gmx:100789883 1634.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04446 01 52142746 52153054 Tsu01g04446 01 52142746 52153054 ECH