Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04442 ATGGTTAAGGTAACTATAGTTGGAAGGGCAAGTGATGGGTTACCTCTAGCACAAGGACTAAGATATGTGAATGAAGAAAATTCCTATCTTTCATTTTACAGGCAACAAGCAGAGTTTATACTAcaagaaatttcaaaaggaACATTGACACCTTCCATGATGACCATTCTCATTGACCATTACTGCTTCAACTTCTTGGTAGAGAATGGAGTTGTTTACATTGTTTTGTGTGAGTCCACATACCCAAGAAAACTGGCATTTCATTACCTAAAAGACATACAAAAAGAGTTTGAGAAGTTTGATAAAACTCTCATAGGCAAAATCACAAAGCCATATAGCTTTGTCAAATTCGATGGTATAATTGCAAACTTTAGTAGACAATACATTGATACTAGAACTCAAGCCAATTTAGCAAAACTTAAAATCAACAAGAAACAAGAGGTAAACATTGTAACAGAAGAAATGTCCAACATTTTAGAAAAGAGGAGAAATTCAGAAACAATGAGAAGGTTAGTAGTTACTCCTCAACCTACATCCTCAACAATATGGTGTTCCCCACGCCTTGAGGTGATTGCAATGAAATGGACACCAATTTTGATCATGGTCATTACTTCTATTGCTCTTCTATGGGCTAGCTTAGTCCTCAAAGATGACTATATTATTTCAGGCTGA 672 0.3482 MVKVTIVGRASDGLPLAQGLRYVNEENSYLSFYRQQAEFILQEISKGTLTPSMMTILIDHYCFNFLVENGVVYIVLCESTYPRKLAFHYLKDIQKEFEKFDKTLIGKITKPYSFVKFDGIIANFSRQYIDTRTQANLAKLKINKKQEVNIVTEEMSNILEKRRNSETMRRLVVTPQPTSSTIWCSPRLEVIAMKWTPILIMVITSIALLWASLVLKDDYIISG 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04442 223 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Tsu01g04442 223 Gene3D Longin domain 1 129 - -
Tsu01g04442 223 CDD Longin 5 128 IPR010908 -
Tsu01g04442 223 SMART Longin_2 40 120 IPR010908 -
Tsu01g04442 223 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 222 - -
Tsu01g04442 223 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 222 IPR044565 GO:0005484|GO:0006888|GO:0006890
Tsu01g04442 223 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Tsu01g04442 223 SUPERFAMILY SNARE-like 1 128 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04442 Tsu-Chr1 52122333 52124138 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04442 K08517 - gmx:100781527 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04442 01 52122333 52124138 Tsu01g04442 01 52122333 52124138 ECH