Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04434 ATGAATTCAATAGCCCTTTTAGGTTTAAGGAAAAGGGTTGTCAACAAAATTTCTCATTGTTTTGTTATTTCGCGGAGATTATGTAAGTTTGATGAtggtagtaataataataatgaatttgATTGCATTGAAGAGCCTTTGAGAAAAATAGTTTCAGATTTTGATTCTAATTTGGATGAAAAGTTCCGTTTAAACGAGGATTCTAGTTTTGATCAAAAACCCTTTTCACTCAGAAAAGGCTTCTTAGAAAGTGTTAAGTTAGATGCTAAGAGGGCTCTTGAGGTTCTTAGACAAGATGGTCCTGGTCTTGATGCTAGGTTAGTTTTAAAGGAGTTGAGTATAAAACCTTCGGGGATTCTTGTTAGAGAGGTTCTCCTTGGGATTTTGAAGAGCATAAATAGCGAGAATAAGACTAGGTGTGCAAAGCTGGCTTATAAGTTTTTTGTGTGGTGTAGTCAGCAGGAGGGTTACCGGCACACTGTGAATGCCTATCACTTGACTATGGATATATATGCTAAGTGCGAAGAGTTTAAGGCGTCGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGTTATCCGGTTACTGCTCGTACTTTCAATATTTTGATTCGTACTTGTGGTGAGGCAGGCTTGGCGAAGACATTGGTGGAGAGTTTCATAAAATCAAAGAACTTTAACTTTTTTCCTTATAAGCATTCCTATAATGCAATTCTACACAGTTTTCTCGTATTAAAACAGTACAAATTGATTGAGTGGGTTTATGATCAGATGCGCGATGATTTTTCCCCAGATATTTTAACTTATAATATTGTCTTGTATGCCAAGTACAGACTTGGAAAGGTGGATCAGTTCAACATACTGTTTGCTGAGATGGGTAGAAATGGATTTTCTCCAGATTTACATACCTACAACATTCTTCTTCATGCTCTCGGTAAAGAGGGCAAACCACTTGAAGCTCTTAAACTTTTAAATCACATGAGAGAAACAGGTATAGAGCCAACTGTACTTCATTTCACCACATTGATAGATGGACTCAGCAGAGCCAGGAAACTGGATGATGGACTCAGCAGAGCCGGGAAACTGGATGCTTGCAAATATTTTTTCGATGAAATGATAAAGAATGGGTTCATGCCAGATGTGGTGGCTTATACTGTTATGATAACAGGGTATGTAGTGGCTGGTGAGCTTGAGAAAGCACAAGAAATGTTTCAAGAGATGCTTTCCAAGGAACAAGTCCCAAATGTTTTTACATACAATTCCATGATTCGGGGGTTATGCATGGCTGGAAAATTTGATGAAGCATGCTCAATGTTTAAGGAAATGGAAAGCAAAGATTCAAAGAGTATAAGATGTAGTGGATCTTTCCAATATGGAGATAATCAAAGCTGCCAAATCTTAGTTTGCCAAGTCCAGTTCTGTTATTTACAGGATAGTACAACTTTATATACTGGCGGAGGTACTTCAATTTTCTGCTGA 1476 0.374 MNSIALLGLRKRVVNKISHCFVISRRLCKFDDGSNNNNEFDCIEEPLRKIVSDFDSNLDEKFRLNEDSSFDQKPFSLRKGFLESVKLDAKRALEVLRQDGPGLDARLVLKELSIKPSGILVREVLLGILKSINSENKTRCAKLAYKFFVWCSQQEGYRHTVNAYHLTMDIYAKCEEFKASWRLVDEMIEKGYPVTARTFNILIRTCGEAGLAKTLVESFIKSKNFNFFPYKHSYNAILHSFLVLKQYKLIEWVYDQMRDDFSPDILTYNIVLYAKYRLGKVDQFNILFAEMGRNGFSPDLHTYNILLHALGKEGKPLEALKLLNHMRETGIEPTVLHFTTLIDGLSRARKLDDGLSRAGKLDACKYFFDEMIKNGFMPDVVAYTVMITGYVVAGELEKAQEMFQEMLSKEQVPNVFTYNSMIRGLCMAGKFDEACSMFKEMESKDSKSIRCSGSFQYGDNQSCQILVCQVQFCYLQDSTTLYTGGGTSIFC 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04434 491 Gene3D Tetratricopeptide repeat domain 248 357 IPR011990 GO:0005515
Tsu01g04434 491 Gene3D Tetratricopeptide repeat domain 358 451 IPR011990 GO:0005515
Tsu01g04434 491 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 353 - -
Tsu01g04434 491 Pfam PPR repeat 168 191 IPR002885 -
Tsu01g04434 491 Pfam PPR repeat 353 376 IPR002885 -
Tsu01g04434 491 Pfam Pentatricopeptide repeat domain 233 272 IPR002885 -
Tsu01g04434 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Tsu01g04434 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Tsu01g04434 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Tsu01g04434 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Tsu01g04434 491 TIGRFAM PPR: pentatricopeptide repeat domain 381 415 IPR002885 -
Tsu01g04434 491 TIGRFAM PPR: pentatricopeptide repeat domain 353 380 IPR002885 -
Tsu01g04434 491 TIGRFAM PPR: pentatricopeptide repeat domain 416 445 IPR002885 -
Tsu01g04434 491 TIGRFAM PPR: pentatricopeptide repeat domain 301 335 IPR002885 -
Tsu01g04434 491 PANTHER OS10G0506000 PROTEIN 351 444 - -
Tsu01g04434 491 PANTHER OS10G0506000 PROTEIN 1 353 - -
Tsu01g04434 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Tsu01g04434 491 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 351 444 - -
Tsu01g04434 491 Pfam PPR repeat family 298 346 IPR002885 -
Tsu01g04434 491 Pfam PPR repeat family 378 426 IPR002885 -
Tsu01g04434 491 Gene3D Tetratricopeptide repeat domain 119 247 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04434 Tsu-Chr1 52072790 52077929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04434 141 447 Miscellaneous Gene Families AT4G11690 24.484 2.16e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04434 - - gmx:100792512 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04434 01 52072790 52077929 Tsu01g04434 01 52072790 52077929 ECH