Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04414 TCTATCATCTCCGACAACATGGCTAACGCATCATCTGGAATGGCTGTTAATGATGAATGTAAATTGAAGTTTCTAGAATTAAAGGCAAAGAGAAACTATCGTTATATTGTGTTTAAGATTGAGAACCAAGAAGTTGTATTGGAGAAACTTGGAGGTCCAGAAGAAACCTATGATGACTTTAGTGCATGTCTTCCTGCTGATGAGTGTCGTTATGCtgtctttgattttgatttcacCACTGCTGAAAACTGCCAGAAAAGCAAGATTGTCTTCATTGGATgGTCTCCTGAGGTATCAAAGGTGAGGCATAAGATGGTATATGCTAGCACCAAGGACAGATTCAAGAGGGAACTTGATGGCATTCAAGTTGAGTTACAAGCAACAGATGCTAGTGAAATGAGCTTGGATCTCATAAAAGCACGTGCAGCAACGCCTCATTCTCTTCCGCTTTTACAATCGAAGGGAAGTAAAAGAGGACACAGAGCAGACTTGGAAATTACTCAACGCAGGGGTACCACCCGACAAGCAGCCTTGTCTTCCCCTTCTGTTACTGGTACGACCACCATAACAATTCAAAGCTCAGTTCCATCATCCTCTTCATCCCAGCAGGAACAACAGCAACCTGAAGTCCTTTTTCTCCCTCTCAATcgcaagaagaagaaggtatCGTGGAAAGACGGCACTGTGGACAATGAGTTCATGCAGAAAAAGAGTTCAAAGAAGTGTTGTATCTTCCATAAAGAGAAGCCCTTCGATGAAGATGatagtgatgaagatgatgtaCCACACGACTCTGATAAACATCCCCATGATCACAGTGACAGTGGATTTTGTTGCAAGAATCACGATGAAGCTGGTCCAAGCAGTTAG 870 0.4011 SIISDNMANASSGMAVNDECKLKFLELKAKRNYRYIVFKIENQEVVLEKLGGPEETYDDFSACLPADECRYAVFDFDFTTAENCQKSKIVFIGWSPEVSKVRHKMVYASTKDRFKRELDGIQVELQATDASEMSLDLIKARAATPHSLPLLQSKGSKRGHRADLEITQRRGTTRQAALSSPSVTGTTTITIQSSVPSSSSSQQEQQQPEVLFLPLNRKKKKVSWKDGTVDNEFMQKKSSKKCCIFHKEKPFDEDDSDEDDVPHDSDKHPHDHSDSGFCCKNHDEAGPSS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04414 289 SMART adf_2 18 143 IPR002108 GO:0003779
Tsu01g04414 289 MobiDBLite consensus disorder prediction 250 289 - -
Tsu01g04414 289 Gene3D Severin 1 145 IPR029006 -
Tsu01g04414 289 PANTHER COFILIN-RELATED 8 142 IPR017904 GO:0015629|GO:0030042
Tsu01g04414 289 MobiDBLite consensus disorder prediction 261 279 - -
Tsu01g04414 289 MobiDBLite consensus disorder prediction 170 210 - -
Tsu01g04414 289 CDD ADF_cofilin_like 12 142 IPR017904 GO:0015629|GO:0030042
Tsu01g04414 289 Pfam Protein phosphatase inhibitor 217 260 IPR011107 GO:0004865|GO:0032515
Tsu01g04414 289 ProSiteProfiles ADF-H domain profile. 13 143 IPR002108 GO:0003779
Tsu01g04414 289 Pfam Cofilin/tropomyosin-type actin-binding protein 20 140 IPR002108 GO:0003779
Tsu01g04414 289 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 8 142 - -
Tsu01g04414 289 MobiDBLite consensus disorder prediction 170 211 - -
Tsu01g04414 289 SUPERFAMILY Actin depolymerizing proteins 9 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04414 Tsu-Chr1 51936071 51943357 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04414 K05765 - cmo:103484078 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04414 01 51936071 51943357 Tsu01g04414 01 51936071 51943357 ECH