Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04413 ATGGTGAGCCAAAGACAACGACTAGCTCGAAAACGTCAGAAAGAAGAAAACCCTGAACTTTTCCCCAAAGTAGAACCAACTCCACCAAAAGACCcatcaaaaaagaagaagaacaaattCAAGCGCAAAAAACCCGATTCAAAAACCAAACCCTCCGGAAAACGCCCTCTTCGAGTCCCCGGTATGAAACCCGGAGACAGTTGTTTCATTTGTAAGGGATTAGATCATATTGCTAAGTTTTGTACTCAAAAAGCTGAATGGGAAAAGAATAAGATATGTTTAAGGTGTAGACGACGTGGTCATAGAGCTCAGAATTGTCCTGATGGTTCTAAAGATGTTAAGAATTGTTATAATTGTGGTGATAATGATCATTCTCTTGCTAATTGTCCTCATCCTCTTCAAGAAGGTGGAACAATGTTTGCTGAATGTTTTGTTTGTAATCAACAAGGGCATTTGAGTAAAAATTGCCCTAAAAATGCTCATGGCATTTATCCAAAGGGTGGTTGTTGTAAAATATGTGGTGGTGTGACACATTTGGCGAAGGACTGTCCTGACAAAGGGCAAAATGGATTTGGTGGTGGTCGTGCTAAAGGACCTGTTCATAACTTACTTAGAACCGATGAGAGGCCCGCAGGCCAGGTTACCAAATTTGTGAGCGGAGATGATATGGATGACGACTTCACAATAGAAGTTAAAAGTGATGACAAGAACAAGTCCAAAGATGGCAATGTAAAACCGAAGAAAGGTCCTAAAGTTGTGAACTTCTATTAG 771 0.3956 MVSQRQRLARKRQKEENPELFPKVEPTPPKDPSKKKKNKFKRKKPDSKTKPSGKRPLRVPGMKPGDSCFICKGLDHIAKFCTQKAEWEKNKICLRCRRRGHRAQNCPDGSKDVKNCYNCGDNDHSLANCPHPLQEGGTMFAECFVCNQQGHLSKNCPKNAHGIYPKGGCCKICGGVTHLAKDCPDKGQNGFGGGRAKGPVHNLLRTDERPAGQVTKFVSGDDMDDDFTIEVKSDDKNKSKDGNVKPKKGPKVVNFY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04413 256 MobiDBLite consensus disorder prediction 34 49 - -
Tsu01g04413 256 ProSiteProfiles Zinc finger CCHC-type profile. 93 108 IPR001878 GO:0003676|GO:0008270
Tsu01g04413 256 SMART c2hcfinal6 115 131 IPR001878 GO:0003676|GO:0008270
Tsu01g04413 256 SMART c2hcfinal6 92 108 IPR001878 GO:0003676|GO:0008270
Tsu01g04413 256 SMART c2hcfinal6 67 83 IPR001878 GO:0003676|GO:0008270
Tsu01g04413 256 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Tsu01g04413 256 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Tsu01g04413 256 PANTHER OS04G0555800 PROTEIN 1 255 - -
Tsu01g04413 256 SUPERFAMILY Retrovirus zinc finger-like domains 61 109 IPR036875 GO:0003676|GO:0008270
Tsu01g04413 256 Gene3D - 61 111 - -
Tsu01g04413 256 ProSiteProfiles Zinc finger CCHC-type profile. 116 130 IPR001878 GO:0003676|GO:0008270
Tsu01g04413 256 ProSiteProfiles Zinc finger CCHC-type profile. 143 158 IPR001878 GO:0003676|GO:0008270
Tsu01g04413 256 MobiDBLite consensus disorder prediction 219 247 - -
Tsu01g04413 256 Pfam Zinc knuckle 143 158 IPR001878 GO:0003676|GO:0008270
Tsu01g04413 256 MobiDBLite consensus disorder prediction 217 256 - -
Tsu01g04413 256 SUPERFAMILY Retrovirus zinc finger-like domains 109 160 IPR036875 GO:0003676|GO:0008270
Tsu01g04413 256 Gene3D - 112 163 - -
Tsu01g04413 256 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04413 - - gmx:121174300 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04413 01 51925003 51928404 Tsu01g04413 01 51925003 51928404 ECH