Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04410 ATGGTTTCACAGTGGGGAATCAAGTTCGCCGTTCACCTCATCACCAACCACTTTGGCAAAATCGTCGCTAATGTTTGCGAAAAACTACTTAACCAAGGACCTCTCACTTTGGATCTCATTGTTCGTTACACTGAACTTTCAACACTTCATGTTAAGAATTCATTGCTTGTATTAATTCAACATAATTGCGTTCAGCCATTCAATATTCAAGGTGTTGGTATAGATGGATCGAAAATTAAGACACAATACTTGGTGTTGTTTGATAACATATTACATCGGCTGAGATTTCCAAAATTCATGGAGATAGTGTCGCAGGAACTTGATCATAAATGTGTACAGATTCTCGAAGGATTGCTCCACAATGGTAGacttaatttgaaacaaattattGACAGAGCAAGTCAAGGCAAAGAAAATGCAGAGGCTGAAGATACTGTACGAGAGAGCCTTTGTAAACTTCTAATGGCTCGATATGTTGAACGCTGTCCAGTCCCTGAGGTTTCGATAGCTGAAGAAACAGATgataataaaaagaaacgtgGTTCTAAGGCTGCCATGGAATTCAAAGCACCAATGACAACAGAACAGCGCGTCATTGAAGCTGCAACACGTGGGGATATGACCAGATTTTCACTCACTGCAGATACAGAATATAATAGTGACGAAGAAACAAAGCCATCTGATATAAGTGTTGCAGAAAATGTTGCAAAAGAGGAGTTAACTCTTTGGCGTGCAAATTTTGAGGAGTTCATACGTTATCTTAGGGATAAGGCATTGATTGAGAATGTAAGAGCACGAATGGATGATGGAGCTGCTACCGTCTTACGTGCAGTATTGGAGGCAACAAGAAATAAGGATAAACaagtgaaaatagaaaaatcagTTCCCTTAACACTGGATACAATTTTCACAGAGGTGATGAAGACTGAAAATGGCCGAACTATGACCATGGATCGTGTTAAAGCTTCTCTTGTTCAGTTGGGTTGCTCAAATCAGATgttatatgaatatattattgATTTAGAACACATTATTCATTGGGCTCGAAATGAAGAgGTTGAGTCAATTGTGTTAAAAAGGTATGGAAGGGATGCCTACCGAATGTTCAGGTATCTGTCAAAGGGAAAACGGTTTTGTCCGACAGATAAGATTGCAGATGATACTCTTGTTGAGAAAAGGGAAGCTCCAAAGTTACTGTTTAAGTTATGGAAGGAAAACTACTTGCAAATGGAGAAAGTAACTGCCACACTCTCTGCGGGAAATACTAACAAGTCATCAACGATTTTTATGTGGAAAGTAAATCAGCCTCTGCTTTGGGAACATGTTCTGGATGAGCTGTACCACGGTGCCTTAAATTTGAAACTAAGAATAGCTTTTGAGCAGGAAAGTAATGAAGAGATTCTAAATATCTCTAAGAAGAAGGTTAAGGAGTCCGAGCCACTGCAGAAGAAATACAGACGGCTAAATAATGTTTTATTACTCTTGGGATCATCATTGATGAAACTTGATGATACTATTATGCTTTTCAATGACTTCTGA 1539 0.3743 MVSQWGIKFAVHLITNHFGKIVANVCEKLLNQGPLTLDLIVRYTELSTLHVKNSLLVLIQHNCVQPFNIQGVGIDGSKIKTQYLVLFDNILHRLRFPKFMEIVSQELDHKCVQILEGLLHNGRLNLKQIIDRASQGKENAEAEDTVRESLCKLLMARYVERCPVPEVSIAEETDDNKKKRGSKAAMEFKAPMTTEQRVIEAATRGDMTRFSLTADTEYNSDEETKPSDISVAENVAKEELTLWRANFEEFIRYLRDKALIENVRARMDDGAATVLRAVLEATRNKDKQVKIEKSVPLTLDTIFTEVMKTENGRTMTMDRVKASLVQLGCSNQMLYEYIIDLEHIIHWARNEEVESIVLKRYGRDAYRMFRYLSKGKRFCPTDKIADDTLVEKREAPKLLFKLWKENYLQMEKVTATLSAGNTNKSSTIFMWKVNQPLLWEHVLDELYHGALNLKLRIAFEQESNEEILNISKKKVKESEPLQKKYRRLNNVLLLLGSSLMKLDDTIMLFNDF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04410 512 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 512 IPR039748 GO:0003697|GO:0005666
Tsu01g04410 512 Pfam RNA polymerase III subunit RPC82 149 317 IPR008806 GO:0003677|GO:0006351
Tsu01g04410 512 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 10 65 IPR013197 -
Tsu01g04410 512 Gene3D - 2 74 IPR036388 -
Tsu01g04410 512 Gene3D - 87 170 IPR036388 -
Tsu01g04410 512 Gene3D - 246 335 IPR036388 -
Tsu01g04410 512 Gene3D - 341 434 IPR036388 -
Tsu01g04410 512 Coils Coil 123 143 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04410 K03023 - gmx:100784750 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04410 01 51905110 51914280 Tsu01g04410 01 51905110 51914280 ECH