Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04402 ATGTCAATGATCTGTGGCTTGCCTCTTGTTGAGTGTGTGTATTGTCTAGCTTGCGCTCGTTGGGCATGGAAAAGATGTCTCCATACGGCTGGCCATGACAGTGAAACTTGGGGCTTTTCTACAATAGAAGAATTTGAGCCAGTTCCACGTCTTTGTCGCTATATTTTATCTGTGTATGAAGATGATCTTCACAACCCTCTTTGGGAACCTCCTGGTGGATATGGAATCAACCCTGATATGTTATTACTTAGAAAAACATATAAAGATACACTTGGACGGGCTCCGCCTTATATATTGTACCTTGATCATGATCACGCTGATATAGTTCTTGCCATAAGGGGATTAAATTTAGCAAAGGAGAGTGACTATGCTGTTCTGCTTGATAATAAATTGGGGAAGAGAAAGTTTGATGGAGGGTATGTTCACAATGGGTTGTTAAAGGCCGCTGGTTGGGTTATGGATGCTGAGTGTGAAATTTTGAGGGAATTGGTAGAGAAATATCCAAATTACACTCTTACTTTTGCTGGACATTCCCTTGGATCGGGAGTAGCTGCAATGTTGAGCATGGTGGTTGTGCAGCATCGAGATAGACTTGGAAATATTGAGAGGAAGAGAGTTAGGTGCTACGCTATCGCTCCTGCTAGGTGTATGTCGCTTAATTTGGCAGTCAGATATGCGGATATCATAAACTCTGTTGTGCTTCAGGATGACTTCTTGCCAAGGACAGCCACTCCATTGGAAGATATATTCAAGTCTCTTTTCTGTTTGCCATGCTTATTGTGCTTGAGGTGCATGAGGGATACATGCATACCAGAGGAGAGGATGCTGAAAGATCCAAGAAGACTTTATGCACCTGGTCGCCTTTATCACATTGTTGAAAGAAAGCCTTTCAGATGTGGAAGGTTTCCGCCGGTTGTGAGAACAGCAGTGCCAGTAGATGGAAGGTTTGAGCATATAGTTCTTTCTTGCAATGCTACATCAGATCATGCCATTATTTGGATAGAGAAAGAAGCCCAAAGGGCTTTGAATTTGATGCTTGAGAAAGATGATACCATGGAAGTACCTGCAAAGCAAATCATGGAGCGTCAGGAAACAATGACAAGACACAGCCAAGAATACAGAGCAGCATTACAAAGAGCGAAAACGTTAGACGTTCCACATGCTTATGCGCCACCATCAGAATATGGGACTTTTGATGAGGAGGGAGAGGAGAGTTCAAGGTCAGAAGCCGAGTCTTCTGTTAGTTCAACTACAAGGAGTAAGGCGAATGAAAGCTGGCATGTATTGATTGAACGTCTTTTTGATAAGGATGAGCATGGTCACATGGTGCTCAAGAGATGA 1341 0.4303 MSMICGLPLVECVYCLACARWAWKRCLHTAGHDSETWGFSTIEEFEPVPRLCRYILSVYEDDLHNPLWEPPGGYGINPDMLLLRKTYKDTLGRAPPYILYLDHDHADIVLAIRGLNLAKESDYAVLLDNKLGKRKFDGGYVHNGLLKAAGWVMDAECEILRELVEKYPNYTLTFAGHSLGSGVAAMLSMVVVQHRDRLGNIERKRVRCYAIAPARCMSLNLAVRYADIINSVVLQDDFLPRTATPLEDIFKSLFCLPCLLCLRCMRDTCIPEERMLKDPRRLYAPGRLYHIVERKPFRCGRFPPVVRTAVPVDGRFEHIVLSCNATSDHAIIWIEKEAQRALNLMLEKDDTMEVPAKQIMERQETMTRHSQEYRAALQRAKTLDVPHAYAPPSEYGTFDEEGEESSRSEAESSVSSTTRSKANESWHVLIERLFDKDEHGHMVLKR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04402 446 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 446 - -
Tsu01g04402 446 Gene3D alpha/beta hydrolase 41 252 IPR029058 -
Tsu01g04402 446 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 446 - -
Tsu01g04402 446 CDD Lipase_3 44 241 - -
Tsu01g04402 446 SUPERFAMILY alpha/beta-Hydrolases 42 270 IPR029058 -
Tsu01g04402 446 Pfam Lipase (class 3) 109 243 IPR002921 GO:0006629
Tsu01g04402 446 MobiDBLite consensus disorder prediction 386 422 - -
Tsu01g04402 446 Pfam Lipase 3 N-terminal region 9 74 IPR005592 GO:0016042
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04402 Tsu-Chr1 51830540 51834475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04402 1 446 Miscellaneous Gene Families AT3G49050 71.186 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04402 - - mtr:MTR_1g100950 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04402 01 51830540 51834475 Tsu01g04402 01 51830540 51834475 ECH