Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04395 atGATGTGGCCATTCACCAAGAAAGGGGTTTCTGGATTTTCATGGAACTCAACTGCTGAACAAGTTACTCATGGAGTCGATGCCACTGGTCTCACTGCCATTGTCACTGGAGCATCCAGTGGCATTGGAGCTGAGACTACTCGTGTTCTTGCTTTGCGTGGCGCTAATGTGATTATGGGTGTGAGAAATATGGTTGCTGCTAAAGATGTCAAAGAAACAATACTCAAGGACATTCCCTCAGCTAAACTTGATGCCATTGAGTTAGATCTCAGCTCTTTGGACTCTGTCAAGAAATTTGCTTCCGAGTTTAAGTCCTCTGGTCGTCCACTCAATATCTTGATAAATAATGCAGGAATTATGGCATGCCCTTTCAAGCTGTCCAAAGACAACATTGAACTACAATTTGCCACCAATCACATAGGCCATTTTCTCTTGACAAATCTTTTGTTGGATACTATGAAGAAAACAACTCGTGAAAGTAAGAAAGAAGGAAGAATTGTTAATGTCGCCTCTGAGGCTCACAGATTCGCATATTCTGAAGGAATCCGTTTTGACAAAATCAATGACGAATCAAGTTACAACAACTGGCGTGCATACGGACAGTCTAAGCTTGCTAACATTTTACATGCCAACCAACTGACGAAACATTTCAAGGAAGATGGAGTGAATATTACTGCAAATTCTCTTCATCCAGGAACAATTGTCACCAATCTTTTCCGACATAACAATGCAGTGAATGGTCTAATAAGTGTGGTTGGGAAACTTGTGATGAAAAATGTCCAGCAGGGAGCAGCTACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGTGAGTATTTTTCAGACAGTAATGTGTACAAAACAACTCCGCATGGAAAAGACGATGATTTGGCCAAGAAACTCTGGGATTTCAGCGTCAATTTGGTTAAGCAGAAATAG 951 0.4143 MMWPFTKKGVSGFSWNSTAEQVTHGVDATGLTAIVTGASSGIGAETTRVLALRGANVIMGVRNMVAAKDVKETILKDIPSAKLDAIELDLSSLDSVKKFASEFKSSGRPLNILINNAGIMACPFKLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYSEGIRFDKINDESSYNNWRAYGQSKLANILHANQLTKHFKEDGVNITANSLHPGTIVTNLFRHNNAVNGLISVVGKLVMKNVQQGAATTCYVALHPQVKGVSGEYFSDSNVYKTTPHGKDDDLAKKLWDFSVNLVKQK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04395 316 Pfam short chain dehydrogenase 32 178 IPR002347 -
Tsu01g04395 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 108 119 IPR002347 -
Tsu01g04395 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 218 IPR002347 -
Tsu01g04395 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 172 IPR002347 -
Tsu01g04395 316 CDD retinol-DH_like_SDR_c_like 30 306 - -
Tsu01g04395 316 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 292 IPR036291 -
Tsu01g04395 316 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 3 315 - -
Tsu01g04395 316 PANTHER RETINOL DEHYDROGENASE 3 315 - -
Tsu01g04395 316 Gene3D - 21 316 - -
Tsu01g04395 316 PRINTS Glucose/ribitol dehydrogenase family signature 108 119 IPR002347 -
Tsu01g04395 316 PRINTS Glucose/ribitol dehydrogenase family signature 158 174 IPR002347 -
Tsu01g04395 316 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Tsu01g04395 316 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04395 Tsu-Chr1 51787212 51791487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04395 34 184 Acyl Lipid Metabolism Gene Families AT1G62610 30.864 2.95e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04395 - - gmx:100784001 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04395 01 51787212 51791487 Tsu01g04395 01 51787212 51791487 ECH