Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04384 ATGATTATGAAGAGCCACACATTCCTAAGggtcatttttcttttcatgtttCTTGGGTGGCTAACGGTTTGGATCTTATTTCCCACAAAGATCTACAAAAACACATGGACTCCCAAACTTAAAAACAACCTAAATTCTACATACTTCAGAGAGCAAGgGGTAAATCTGCTGCTTTTCACATTCCCTATAATGTTCATTGGAGCTTTGAGTTGTATTTATCTCCATCTTCACGGggaaaaaataacacaaaaattaCCCTCCACAAGcGGAGCTCTGAAAAGATGTTTATGTTACCTGAGACGACCATTCTTGGTGATGTCTCAAATTGGAATTGTTTCATCTATGGAGCTTATTTTTGCATTCATGTTTGTTGCACTTTTGATATGGTCTCTTTCCAATTACTTATATATTAGTTTTGGTCATCTCCATATGCACAAACAAGGCGAGAAAGTATGGGAAGCAAAGTTCAGGAGTGTATCTTTAAGACTTGGGTACATAGGAAACATATGTTGGGCATTTCTGTTCTTTCCAGTGACAAGAGGGTCTTCTATTCTGCCTCTTGTTGGTCTCACATCTGAATCAAGCATTAAATACCATATTTGGCTTGGACATTTATCTATGGTTCTTTTTGCTGCACATACCATAGGTTTCATCATCTATTGGGCCATCACCAACCAAATGGTTGAGATGTTAGAGTGGAGCAAGACATATGTATCAAATGTAGGTGGAGAGATTGCAAGTATAATAGCATTAGCAATGTGGATAACAAGCATTCCACGGATAAGACGTAAGATGTATGAAGTATTCTTCTACACTCACCATCTCTATATTCTCTATATCTTATTCTATGCCATCCATGTTGGTGTTGAATACATGTGCATGATTGCTCCTGGGATTTTTCTATTCATCATTGATAGACATCTTAGATTCTTACAATCTCGACAAAATGCTCGTTTACTATCAGCTCGTATTTTACCTTGTCATGCACTTGAGCTCACCTTCTCCAAGAATCCAAGTTTACACTATAACCCCACAAGCTTGGTTTTCATAAATGTTCCAAAGGTTTCCAAGCTGCAATGGCACCCTTTTACAGTGACTTCTAGTAGTAATATGGAGACTAATTCTCTTAGTGTTACCATAAAAAATGTGGGTAGCTGGTCAAACAAGCTTTATCAGGAACTCTCTTCAACAACTTTGGATCATCTTAGGGTTTCAGTTGAAGGACCCTATGGACCACATACTGCACAATTTCTAAGGCATGAACAGATTGTGATGATAAGTGGTGGAAGTGGAATAACTCCTTTCATATCAATAATCAGAGATCTCATATTTCAAAGCCAACAACAAGAATTTCAACCTCCAAAACTCCTACTTGTTTGTATTTTCAAAAACTATGTTGATCTAGCCATGTTAGATCTTATACTTCCTGCTTCTGGTTCaacaattcaaatctcaaaCCTTCAACTACAAATTGAAGCTTACATCacaagagaaaaagaagaaccaCCAAGAGATACTCAGAAACATATTCAAACAATATGGTTTAAACCAAACCTCTTAGACTCTCCTATCTCAGCTATATTAGGCCCAAATAACTGGTTATGGCTTAGTGCTATAATCACATCATCTTTCATCATGTTTCTCCTCATTTTAGGGATCGTTACTCGTTACTATATCTATCCAATCGAAAATAAATCAGGTGAAGTTTATAATTGGACATTCAAGGTTATGTGGTACATGTTTCTACTTTGTGCATGCATATGTTTATGTTCTAGTGCAATTTTTCTTTGGTGGAAGAGACAAAACAACACCTTAGAAAATAAGCAAATAATGAATGTAGAAGTTCAAACACCAACAAGATCACCAGGGTCATGGATTTATGGATCAGAAAGAGAACTTGAAAGTCTTCCTCATCAATCTTTAGTGCAAGCTACCAATGTACATTTTGGTGCAAGACCTGATCTCAAGAAAATTCTGTTTGAGTGTGAAGGCAAAGATGTTGGAGTTATGGTTTGTGGTCCAAGAAAATTGAGACATGAAGTTGCTAGAATTTGTGCTTCTGGTTTGGCTGATAATCTTCACTTTGAATCCATCAGCTTTAATTGGTGGGAAGCCAAACTGAAATATTCAGCACTTGCTTTAGGCTTTGTTGGGAATATTTGCTTAGCTTTTCTATTCTTTCCGGTTTCAAGAGGGTCTTCGATTTTGAGGTTCATTGGCCTAACTTCAGAAGCAAGTATCAAGTATCATATCTGGCTAGGACATATTGCAATGACAATGTTCGCAGCTCATGGACTATGCTATGTTACTTTTTTTGAAAAGACACATCAAACCGCAGAGATATTCAAATGGAGCAAAGTTGGCATCTCTAATGTGGCTGGAGTAGTAGCACTGCTTGCTGGATTAACCATGTGGACTACAACCTTACCTTTTATAAGGCGGAAATTTTTCGAGCATTTCTTCTACATTCATCACTTGTACATTGTTTTTATAGTCTTCTTTATCCTACATGTGGGATTTTCCTTTTCATGCATAATGCTCCCTGgattttacctttttttggTCGACCGATATCTAAGATTCCTACAGTCGCAGCAGAAAATTCAGTTGGTTTCTGCTCGCGTTTTACCTTGTGAAGCTGTTGAGCTGAATTTCTCCAAGAATCCAGGACTGTGCTATGCTCCAACGAGTATAATTTTCATCAATATTGCTAGTATATCCAAGTTGCAATGGCACCCTTTTTCAATCACCTCATGCAGTAATACTGATTCTGACACCTTAAGCATTGTCATCAAAAGTACAGGAAAATGGTCCCATACATTGTTCCAGAAACTATCAACTTTGTCTCCACCGTCCCACCTTGATGTCTCCATTGAAGGGCCGTATGGACCAGCTTCAACTTTTTTCTCAAGACATGAAACGCTAGTGATGGTGAGTGGAGGAAGTGGCATTACTCCTTTCATCTCAATAATCCGTTCGCTACTCTTTAAGGCCAACACAGAAGGCGGAAAATCTCCCAAAGTTCTTCTTATATGTTCCTTCAAGAAGTCCATTGATCTTACAATGATAGACCTAATCCTTCCTGTCTCAGGCACCGCCCTTGACACATCACGCCTGCAACTTCAGATTGAAGCCTATGTAACAAGAGAGAAAATGCCAGCCGCAACGAATGATAGAAAGCTTCTTCAAACATTATGGTTCAAGTCAAATGCATTAGACGAACCAATTTCCGCAGTCTTTGGACAAAACAGTTGGCTCTATCTTGGAATTATCATCACAACTTCCTTTATATTATTCCTTTTAACCATTGCCATCCTAACTAGATACTACATATATCCTATTGATCATAATTCTGACCTGATATACCCTTATTTCTTAAGGTCCATTCTTAGCATGTTGTTCGTATGCGTATCCATAGTCATTGCAGCTACATCTGTCTTTCTATGgaacaaaaaacataacaaGGCTTTGAAGCAGATTAAAAACACATCGACTCCAACAACTTCGCCAGGCTCAGTAAATCACAAAACTGACAGAGAATTAGAGAGTCTTCCGAACCAATCCTTTATCCAAACAGCTGAAATTCATTACGGCGAAAGGCCTGATATAAAGAAAATACTTTCTAACTGTGATGGATCAAGCATTGGAGTTCTTGTTAGTGGCCCAGGGAAAATGAGACATGAAGTAGCATCAATTTGCACATCTTGTTCAACAGATAACTTACATTTTGAGTCTATTAGCTTCAGCTGGTCATCCACATTGTACAACTTGAAAATTCTGGACTCTTATTGGGGAGCATGTTCAGCAGATGGAGATTGCACATCAGGTAACTCTTCATGCACCTCCTCCAACTCCCATAATGGACTCTCGGCTATGAAGCATTGGTAA 3888 0.3737 MIMKSHTFLRVIFLFMFLGWLTVWILFPTKIYKNTWTPKLKNNLNSTYFREQGVNLLLFTFPIMFIGALSCIYLHLHGEKITQKLPSTSGALKRCLCYLRRPFLVMSQIGIVSSMELIFAFMFVALLIWSLSNYLYISFGHLHMHKQGEKVWEAKFRSVSLRLGYIGNICWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSMVLFAAHTIGFIIYWAITNQMVEMLEWSKTYVSNVGGEIASIIALAMWITSIPRIRRKMYEVFFYTHHLYILYILFYAIHVGVEYMCMIAPGIFLFIIDRHLRFLQSRQNARLLSARILPCHALELTFSKNPSLHYNPTSLVFINVPKVSKLQWHPFTVTSSSNMETNSLSVTIKNVGSWSNKLYQELSSTTLDHLRVSVEGPYGPHTAQFLRHEQIVMISGGSGITPFISIIRDLIFQSQQQEFQPPKLLLVCIFKNYVDLAMLDLILPASGSTIQISNLQLQIEAYITREKEEPPRDTQKHIQTIWFKPNLLDSPISAILGPNNWLWLSAIITSSFIMFLLILGIVTRYYIYPIENKSGEVYNWTFKVMWYMFLLCACICLCSSAIFLWWKRQNNTLENKQIMNVEVQTPTRSPGSWIYGSERELESLPHQSLVQATNVHFGARPDLKKILFECEGKDVGVMVCGPRKLRHEVARICASGLADNLHFESISFNWWEAKLKYSALALGFVGNICLAFLFFPVSRGSSILRFIGLTSEASIKYHIWLGHIAMTMFAAHGLCYVTFFEKTHQTAEIFKWSKVGISNVAGVVALLAGLTMWTTTLPFIRRKFFEHFFYIHHLYIVFIVFFILHVGFSFSCIMLPGFYLFLVDRYLRFLQSQQKIQLVSARVLPCEAVELNFSKNPGLCYAPTSIIFINIASISKLQWHPFSITSCSNTDSDTLSIVIKSTGKWSHTLFQKLSTLSPPSHLDVSIEGPYGPASTFFSRHETLVMVSGGSGITPFISIIRSLLFKANTEGGKSPKVLLICSFKKSIDLTMIDLILPVSGTALDTSRLQLQIEAYVTREKMPAATNDRKLLQTLWFKSNALDEPISAVFGQNSWLYLGIIITTSFILFLLTIAILTRYYIYPIDHNSDLIYPYFLRSILSMLFVCVSIVIAATSVFLWNKKHNKALKQIKNTSTPTTSPGSVNHKTDRELESLPNQSFIQTAEIHYGERPDIKKILSNCDGSSIGVLVSGPGKMRHEVASICTSCSTDNLHFESISFSWSSTLYNLKILDSYWGACSADGDCTSGNSSCTSSNSHNGLSAMKHW 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04384 1295 SUPERFAMILY Riboflavin synthase domain-like 868 964 IPR017938 -
Tsu01g04384 1295 Gene3D - 409 526 IPR039261 -
Tsu01g04384 1295 Gene3D - 956 1082 IPR039261 -
Tsu01g04384 1295 PRINTS Cytochrome B-245 heavy chain signature 241 264 IPR000778 GO:0016020|GO:0016491
Tsu01g04384 1295 PRINTS Cytochrome B-245 heavy chain signature 266 286 IPR000778 GO:0016020|GO:0016491
Tsu01g04384 1295 PRINTS Cytochrome B-245 heavy chain signature 618 636 IPR000778 GO:0016020|GO:0016491
Tsu01g04384 1295 SFLD Ferric Reductase Domain 703 1250 - -
Tsu01g04384 1295 SFLD Ferric Reductase Domain 28 703 - -
Tsu01g04384 1295 SUPERFAMILY Riboflavin synthase domain-like 315 412 IPR017938 -
Tsu01g04384 1295 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 956 1028 IPR039261 -
Tsu01g04384 1295 Pfam Ferric reductase NAD binding domain 420 686 IPR013121 GO:0016491
Tsu01g04384 1295 SFLD Ferric reductase subgroup (FRE) 13 703 - -
Tsu01g04384 1295 SFLD Ferric reductase subgroup (FRE) 703 1250 - -
Tsu01g04384 1295 PANTHER FERRIC REDUCTION OXIDASE 4-RELATED 702 1249 - -
Tsu01g04384 1295 PANTHER NADPH OXIDASE 8 701 - -
Tsu01g04384 1295 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 404 476 IPR039261 -
Tsu01g04384 1295 Pfam Ferric reductase NAD binding domain 972 1233 IPR013121 GO:0016491
Tsu01g04384 1295 Pfam FAD-binding domain 868 966 IPR013112 GO:0016491
Tsu01g04384 1295 Pfam FAD-binding domain 316 413 IPR013112 GO:0016491
Tsu01g04384 1295 Gene3D Translation factors 310 408 - -
Tsu01g04384 1295 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 863 971 IPR017927 GO:0016491
Tsu01g04384 1295 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 312 416 IPR017927 GO:0016491
Tsu01g04384 1295 Pfam Ferric reductase like transmembrane component 164 282 IPR013130 -
Tsu01g04384 1295 Pfam Ferric reductase like transmembrane component 714 834 IPR013130 -
Tsu01g04384 1295 PANTHER NADPH OXIDASE 702 1249 - -
Tsu01g04384 1295 Gene3D - 595 706 IPR039261 -
Tsu01g04384 1295 Gene3D - 1138 1254 IPR039261 -
Tsu01g04384 1295 CDD NOX_Duox_like_FAD_NADP 870 1049 - -
Tsu01g04384 1295 PANTHER FERRIC REDUCTION OXIDASE 4-RELATED 8 701 - -
Tsu01g04384 1295 CDD NOX_Duox_like_FAD_NADP 319 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04384 Tsu-Chr1 51684914 51695598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04384 7 702 Miscellaneous Gene Families AT5G23980 59.402 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04384 K00521 - gmx:112998154 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04384 01 51684914 51695598 Tsu01g04384 01 51684914 51695598 ECH