Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04375 ATGAAGACTCTAACATTCCAAAATTCCTATATTATTGGTGTGATCTCTGCAATTCTGATATTTGGATCACTAGTAGAATGTAGAGTACCAAGTAGTTATAATTTGAACAAAGTGGATTACACCGCTATTAATTGCCGAAAACACAGTGCACTTTTGACAGATTTTGGTGCTGTTGGTGATGGAAAAACCCTTAACACAAAGGCATTTAATTCCGCAATAACAAACCTTAGCCAATATGCAAATGATGGTGGTGCATTACTTATTGTTCCACCAGGAAAATGGTTAACCGGAAGCTTTAATCTCACAAGTCATTTCACTCTTTTTCTCCAAAAGGGTGCTGTTATTCTTGCATCTCAGAATGAAGCAGATTGGCCTCAACTTCCTGTATTACCTTCGTATGGAAGAGGAAGAGAAGCGCCTGATGGAAGATTCAGTAGTCTCATTTTTGGAACTAATCTCACTGATGTTATAATTACTGGTAATAATGGGACAATTGATGGACAAGGATCTTATTGGTGGGACAAGTTCAAACAGGGTCAATTAAAACTCACTAGGCCATACTTAATTGAGATCATGTATTCTGatcaaattcaaatatcaaATCTCACTTTGGTCAATTCCCCTTCTTGGTTTGTCCATCCAATTTACAGCAGTAACATAATTGTAAATGGACTTACCATTCGTGCACCGTTGGATGTTCCAAACACAGATGGCATCAACCCAGaTTCATGTACTAATGTTAGAATTGAAGATAACTATATTGAATCCGGTGATGATTGTATTGCAATTAAAAGTGGATGGGATGAGTATGGAATCAAATTCGGAAAGCCATCACAACATATCGTCATAAGAAGGCTAACATGTATATCTCCTAAAAGTGCTATGATTGCAATAGGCAGCGAAATGTCAGGTGGCGTCCAAGATGTTAGAGTTGAAGATTTAACTGCCATCAACACAGAATCAGCTGTTAGAATTAAATCGGCTGTCGGTAGAGGTGGATTTGTGAAGGACATTTTTGTAAAAGGATTGAATTTGAACACAATGAAATATGTGTTTTGGATGACAGGTTCTTATGGAGATCATCCTGATAAAAAATTTGATCCAAAAGCATTGCCTAAGATTAATGGAATAAATTTTAGAGATGTTACTGCTAAGAATGTGACGATTGCGGGAAAGCTAGAAGGAATTTCTAATGATCCTTTTACAGGAATATGCATTTCTAATGCGACTATTGAAATGTTCGTAAAAAAGGATGCAACTGTTGAAATGGGTTTAGATAAGGTGAAGCTTCCATGGAATTGTACCGATGTTTCTGGAGTTACAAATAATGTGGTTCCTGAACCATGTGCATTGTTGCCGCCGAAGAAGGTGGATTGTCCTTTCCCAACTGATAAACTGCCCATTGAAAGTGTTCAGTTCAAGACTTGTTCCATCTAA 1437 0.3702 MKTLTFQNSYIIGVISAILIFGSLVECRVPSSYNLNKVDYTAINCRKHSALLTDFGAVGDGKTLNTKAFNSAITNLSQYANDGGALLIVPPGKWLTGSFNLTSHFTLFLQKGAVILASQNEADWPQLPVLPSYGRGREAPDGRFSSLIFGTNLTDVIITGNNGTIDGQGSYWWDKFKQGQLKLTRPYLIEIMYSDQIQISNLTLVNSPSWFVHPIYSSNIIVNGLTIRAPLDVPNTDGINPDSCTNVRIEDNYIESGDDCIAIKSGWDEYGIKFGKPSQHIVIRRLTCISPKSAMIAIGSEMSGGVQDVRVEDLTAINTESAVRIKSAVGRGGFVKDIFVKGLNLNTMKYVFWMTGSYGDHPDKKFDPKALPKINGINFRDVTAKNVTIAGKLEGISNDPFTGICISNATIEMFVKKDATVEMGLDKVKLPWNCTDVSGVTNNVVPEPCALLPPKKVDCPFPTDKLPIESVQFKTCSI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04375 478 Pfam Glycosyl hydrolases family 28 144 418 IPR000743 GO:0004650|GO:0005975
Tsu01g04375 478 Gene3D - 33 433 IPR012334 -
Tsu01g04375 478 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 18 477 - -
Tsu01g04375 478 PANTHER PECTIN LYASE-RELATED 18 477 - -
Tsu01g04375 478 SUPERFAMILY Pectin lyase-like 46 454 IPR011050 -
Tsu01g04375 478 SMART pbh1 1 22 IPR006626 -
Tsu01g04375 478 SMART pbh1 306 327 IPR006626 -
Tsu01g04375 478 SMART pbh1 217 243 IPR006626 -
Tsu01g04375 478 SMART pbh1 244 265 IPR006626 -
Tsu01g04375 478 SMART pbh1 374 408 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04375 Tsu-Chr1 51586736 51593647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04375 14 476 Glycoside Hydrolase AT3G48950 64.819 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04375 - - gmx:100779166 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04375 01 51586736 51593647 Tsu01g04375 01 51586736 51593647 ECH