Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04365 ATGCTATGTAGTAAAACTGCTACTAACAGTTTTTCACTACCCCGCTTCCAAGAAACTTGTTTGCGTCTTCTTTCATTCTGCAACTCAAATTCCCTCAAAGAAGGAATATGCATTCATAGCCCCATAATCAAATTGGGTCTTCAACATGACCTCTATTTAACCAACAATTTGTTGTCTTTGTATGCTAAATGCTTTGGAGTTCATCAAGCACGCCACTTGTTCGATGAAATGCCTGACAGAGATGTCGTATCATGGACAACTGTTCTGTCTTCTCATACCAAGAATAAACATCATTTTGATGCCCTTGAGTTGTTTGATATGATGTTAGGTTCGGGTCAGTATCCGAACGAGTTTACATTGTCGAGTGCTTTAAGATCGTGTTCTGCTTTAGGGGAGTTTGATTGTGGGACAAAAATTCATGCTTCGGTTGTAAAGCTTGGGTTAGAGATGAATCCTTTTCTTGGCACTTCGTTGATTGAGTTTTATACAAAAAGTTGTTGTAGTACTGTTGAAGTATATAAATTGCTTTCGTTAGTGAAGGGTGGTGGTGATGTTGTGTCTTGGACAACAATGGTTTCTTCTTTAGTGGAAACTGGTAAATGGGGGGAAGCTTTTGAAATTTACGTAAAAATGATTGAAGCAGGTGTTTACCCAAATGAATTCACATTTGTTAAACTCTTAAGTGCGGCGTCTTCTTTTCTCGGTCTGGCTTATGGAAAACTGCTGCACGGACAGTTAATCATATTTGGTGCTGAAATGAATTTGGTGTTGAAGACAGCCATTGTTGATATGTATTCAAAATGCAGACGGATGGAAGATGCTATTAAGGTCGCCAATGTGACACCTGAATATGATGTGTGCTTATGGACAACCATTATCTCTGGATTCACTCAAAATTTGCAAGTTAGAGAGGCTGTCAGTGCATTTCTTGATATGGAATCAACAGGCATCCTACCAAATAATTTTACGTATGCTAGTTTATTGAACGCTAGCTCCTCAATTTTATCATTGGACCTAGGGGAACAATTTCATTCACGGGTTATCATTATTGGACTTGAGAATGATCTTTATATAGGAAATGCACTAGTTGATATGTACATGAAATGCTCCCACAGCACTACAAATGCTGTGAAAGCATTTAGAGAGATAGCATCACCAAATGTCATCTCTTGGACTTCTTTGATTGCTGGTTTTGCAGAAAATGGATTAGAAGAACAGTCTTTTCAGTTGTTTTCCGAGATGCAAGCAGCAGGAGTACAACCAAATTTCTTTACACTGTCTACGATTCTTGGAGCATGCAGCAAAGTGAGGTCTCATGTTCCGACAATGATGCTCCATGGACatatcataaaaacaaaagcagACATGGATATAGCTGTTGGGAATGCTCTTGTAGATGCTTATGCTGGAGGGGGGATGACAGATGAGGCATGGTCTGTAATTGGCACGATGAGTCGTAGAGATTCCATCACGTACACATGTTTAGCCGCAAGATTAAACCAGAAGGGGGATCATGGAATGGCATTAAAAGTTTTCATTCACATGTGCAATGATGGGATTAAAATGGATGAATTTAGCTTGGCAAGTTTTTTATCAGCTGCAGCTGGCTTAGGCGCTATGGAAACTGGAAAGCAGCTGCACTGTTATTCTGTCAAATCAGGCTTTCATATATGTAACTCAGTTTCAAACAGCTTAGTTCACTTGTACAGCAAATGTGGTAGTATTCACGATGCAAATAGAGCTTTCAAAGATATAAGTGAGCCAGATGCATTTTCATGGAACGGTTTGATATCTGGATTGGCATCAAATGGATATATATCCCATGCTCTTTCTGCTTTTGATGACATGAGGTTAGCAGGAGTTAAACCTGATTTTATTACATTCTTATCACTGATTTCTGCTTGCAGTCATGGTGGTTTATTGGATCTTGGTCTGGAGTATTTCTATTCTATGCAAAAAGTATACCATATAACACCAAAATTAGATCACTATGTGTGTTTagttgatctccttggtagagGTGGTCGACTAGAGGAAGCTATGGGAGTTATTGAAACAATGCCTTTCAAGCCAGACTCTTTGGTTTGCAAAACTTTATTAAATGCTTGCAATTTACATGGAAATGTTGCTTTGGGAGAAGATATGGCAAGGCGATGTCTTGAGCTTGATCCATCTGATCCTGCAATATATTTGCTGCTTGCAAACTTGTATGACAAAGCTGGACTCTCTGATTTTGGAGAGAAGACACGTCGGTTGATGAGAGAACGAGGTTTAAGGAGAAGTCCTGGGCAGTGTTGGATGGAGATACGGGCCAGAATTCATCACTTCTCTGCAGGAGAGAAGATTGACGAGGACGAGATTAATGAAAAGCTGAAGTTTCTTATAACTGAATTTAGAAATAGAGGGTATCAATACCAAGAGAGTGAAGATAAGTTTTACCACTCAGAACAATTGGCAGTTGCATATGGTTTTCTTAATGTACCGACTATGGCTCCAATACGCATATACAAGAATTCACTGATCTGCCCTCACTGTCATACTTTTATGATGTTTGCCACACAAGTGGTTGGTAGGGAGATAATTTTGAGGGATAGGAAACGGTTCCATTTCTTTAAGGACGGCCAGTGTTCTTGCAGAGGTCACTCATGA 2649 0.3896 MLCSKTATNSFSLPRFQETCLRLLSFCNSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSLYAKCFGVHQARHLFDEMPDRDVVSWTTVLSSHTKNKHHFDALELFDMMLGSGQYPNEFTLSSALRSCSALGEFDCGTKIHASVVKLGLEMNPFLGTSLIEFYTKSCCSTVEVYKLLSLVKGGGDVVSWTTMVSSLVETGKWGEAFEIYVKMIEAGVYPNEFTFVKLLSAASSFLGLAYGKLLHGQLIIFGAEMNLVLKTAIVDMYSKCRRMEDAIKVANVTPEYDVCLWTTIISGFTQNLQVREAVSAFLDMESTGILPNNFTYASLLNASSSILSLDLGEQFHSRVIIIGLENDLYIGNALVDMYMKCSHSTTNAVKAFREIASPNVISWTSLIAGFAENGLEEQSFQLFSEMQAAGVQPNFFTLSTILGACSKVRSHVPTMMLHGHIIKTKADMDIAVGNALVDAYAGGGMTDEAWSVIGTMSRRDSITYTCLAARLNQKGDHGMALKVFIHMCNDGIKMDEFSLASFLSAAAGLGAMETGKQLHCYSVKSGFHICNSVSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGLISGLASNGYISHALSAFDDMRLAGVKPDFITFLSLISACSHGGLLDLGLEYFYSMQKVYHITPKLDHYVCLVDLLGRGGRLEEAMGVIETMPFKPDSLVCKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDKAGLSDFGEKTRRLMRERGLRRSPGQCWMEIRARIHHFSAGEKIDEDEINEKLKFLITEFRNRGYQYQESEDKFYHSEQLAVAYGFLNVPTMAPIRIYKNSLICPHCHTFMMFATQVVGREIILRDRKRFHFFKDGQCSCRGHS 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04365 882 Pfam DYW family of nucleic acid deaminases 812 880 IPR032867 GO:0008270
Tsu01g04365 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Tsu01g04365 882 Pfam E motif 706 768 IPR046848 -
Tsu01g04365 882 Pfam PPR repeat family 386 434 IPR002885 -
Tsu01g04365 882 Pfam PPR repeat family 80 127 IPR002885 -
Tsu01g04365 882 Pfam PPR repeat family 285 330 IPR002885 -
Tsu01g04365 882 Pfam PPR repeat family 588 636 IPR002885 -
Tsu01g04365 882 Pfam PPR repeat family 184 229 IPR002885 -
Tsu01g04365 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Tsu01g04365 882 PANTHER - 26 422 - -
Tsu01g04365 882 PANTHER - 184 494 - -
Tsu01g04365 882 PANTHER - 26 422 - -
Tsu01g04365 882 Gene3D Tetratricopeptide repeat domain 245 334 IPR011990 GO:0005515
Tsu01g04365 882 Gene3D Tetratricopeptide repeat domain 136 236 IPR011990 GO:0005515
Tsu01g04365 882 Gene3D Tetratricopeptide repeat domain 603 809 IPR011990 GO:0005515
Tsu01g04365 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Tsu01g04365 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Tsu01g04365 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Tsu01g04365 882 SUPERFAMILY TPR-like 563 740 IPR011990 GO:0005515
Tsu01g04365 882 Gene3D Tetratricopeptide repeat domain 12 135 IPR011990 GO:0005515
Tsu01g04365 882 Gene3D Tetratricopeptide repeat domain 442 568 IPR011990 GO:0005515
Tsu01g04365 882 Gene3D Tetratricopeptide repeat domain 335 441 IPR011990 GO:0005515
Tsu01g04365 882 TIGRFAM PPR: pentatricopeptide repeat domain 83 117 IPR002885 -
Tsu01g04365 882 TIGRFAM PPR: pentatricopeptide repeat domain 591 624 IPR002885 -
Tsu01g04365 882 TIGRFAM PPR: pentatricopeptide repeat domain 288 320 IPR002885 -
Tsu01g04365 882 TIGRFAM PPR: pentatricopeptide repeat domain 186 220 IPR002885 -
Tsu01g04365 882 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Tsu01g04365 882 PANTHER - 500 805 - -
Tsu01g04365 882 Pfam PPR repeat 462 487 IPR002885 -
Tsu01g04365 882 Pfam PPR repeat 664 687 IPR002885 -
Tsu01g04365 882 Pfam PPR repeat 490 520 IPR002885 -
Tsu01g04365 882 PANTHER - 500 805 - -
Tsu01g04365 882 PANTHER - 184 494 - -
Tsu01g04365 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04365 Tsu-Chr1 51534883 51537534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04365 101 881 Glycoside Hydrolase AT3G49170 33.787 1.88e-153 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04365 - - gmx:100791770 1397.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04365 01 51534883 51537534 Tsu01g04365 01 51534883 51537534 ECH