Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04350 ATGGAAGGAAGTACTATTAGTTCACCAAGCAATTTGCGCGAAGACAGCACTCATATGTCAAAAGATTCTCCAGAGATTGAGCAAGATTTAGTTGTGGGTGAACCTGGAAATGCTCAGTCCGAGTTTGTCCGCTCCAAGTCTGGTGACGATTCAACTTTCATATTGAATGACTATCTGGGAAATGGCAGAGCTGGCAACACCATTCTAAAAGAAAACGACGGGGAAGTGTCTGGGGAAGAAGACTTTGCTGAGGTCGAAGTAGAGCATCAGGAGACATTTTTGGGGCACACCAGTCCAATCAGCCGGTGCCGCTTCTCTGCGTCTGGAAACAATATTGCAAGTGCTTCTCTAGATGGAACTGCCAGGATATGGACATATGATGCATCAACTCCGGCGTCTAGAAATGCAACCATATATTGTGGCACTGAAATTTTGTCACTTGACTGGGAATGCAAATCAGACCGCTTGCTTCTAATAGGTACATCCGATGGGTGCATTAAGGCATGGAATGTGGACGCAAAGAGAGTTGTTTGTGACCTTAACACAACTGAAGCATTTCCAAGTGTATTGGACATAAAGTGCAGTCCCGTTGAACCTATTTTTGTGTCTGCAGCAGCATCAGGAGGGTCTCGTTCCAACTATTTTGACAACCTGGGTTTCGCTTCACTGACTGTATGGAACATGAAGACATGGAAAGCCATGACAGTTCTTCCTCTTGGAGAAGATCCACCAGCAATTACTTCTCTATGTTTCAATCACAACGGGAAGATTTTAGCAGCTTCTGCTGTTGATGGAATGATTCACATGTTTGACATGTCTGCTGGTCTACAAATCACTGGTTGGCCTGCACATGATTCTTCCATCAGTTCTATTCTTTTTGGACCAGATGAGACTAGTATTTTTAGCTTCGGCTCTGATGGGAAGATTTTTGAGTGGAGCTTGCAAAATCAAGGTCAAATCTTGTGGTCAAGAGACTGTAGTAGGTTTTGTTATCCTGTCAGTGGTTCAAATTATTACAGACAGGATATGGCATTAGATGCAAATGGGAGAAGACTCTTGGTAACATCCAGTTCAGTTAGAGCACCCATATATCAGGTTCAGGATCATTTGAATGGTTGGAGAACACTTTCTCACAGTGCTCCTATTACTGCTGTAGATTGGCATCCAACCTTGCCCATTTTCTTGACTGGATCAGCTGATAACTCTGTCCGAGTAACGTCATTATTATCATAG 1233 0.4347 MEGSTISSPSNLREDSTHMSKDSPEIEQDLVVGEPGNAQSEFVRSKSGDDSTFILNDYLGNGRAGNTILKENDGEVSGEEDFAEVEVEHQETFLGHTSPISRCRFSASGNNIASASLDGTARIWTYDASTPASRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGSRSNYFDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSFGSDGKIFEWSLQNQGQILWSRDCSRFCYPVSGSNYYRQDMALDANGRRLLVTSSSVRAPIYQVQDHLNGWRTLSHSAPITAVDWHPTLPIFLTGSADNSVRVTSLLS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04350 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 375 410 - -
Tsu01g04350 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 93 124 - -
Tsu01g04350 410 Pfam Anaphase-promoting complex subunit 4 WD40 domain 240 293 IPR024977 -
Tsu01g04350 410 PANTHER OS05G0299300 PROTEIN 68 408 - -
Tsu01g04350 410 Gene3D - 340 408 IPR015943 GO:0005515
Tsu01g04350 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 316 IPR001680 GO:0005515
Tsu01g04350 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 93 134 IPR001680 GO:0005515
Tsu01g04350 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 410 IPR001680 GO:0005515
Tsu01g04350 410 MobiDBLite consensus disorder prediction 1 27 - -
Tsu01g04350 410 Gene3D - 209 338 IPR015943 GO:0005515
Tsu01g04350 410 Gene3D - 37 208 IPR015943 GO:0005515
Tsu01g04350 410 SUPERFAMILY WD40 repeat-like 85 405 IPR036322 GO:0005515
Tsu01g04350 410 Pfam WD domain, G-beta repeat 90 124 IPR001680 GO:0005515
Tsu01g04350 410 Pfam WD domain, G-beta repeat 375 405 IPR001680 GO:0005515
Tsu01g04350 410 SMART WD40_4 86 125 IPR001680 GO:0005515
Tsu01g04350 410 SMART WD40_4 230 271 IPR001680 GO:0005515
Tsu01g04350 410 SMART WD40_4 274 313 IPR001680 GO:0005515
Tsu01g04350 410 SMART WD40_4 369 407 IPR001680 GO:0005515
Tsu01g04350 410 SMART WD40_4 131 170 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04350 K24760 - mtr:MTR_1g099380 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04350 01 51437840 51443564 Tsu01g04350 01 51437840 51443564 ECH