Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04346 ATGGCAAAAAATTCTCACACTTTGtcactttttcttctcttcctcaCTCTTGTAGGAACCTCCCATGCTGGTGGTATAGCCATTTACTGGGGCCAAAGCAGCGACGAGGGCACACTATACGAAGCATGTGCCACTAGGAGATACACCCACATAAACATTGCATTTCTCTACAGGTTCGGCAATGGCCGAACCCCTCAGTTGAACCTAGCAGGTCACTGCAACCCGTCAACTAATTCATGCACCAGAATAGGTAAAGACATCAAGTATTGCCAAAGTAGAGGTATCACAATGTTGCTTTCTATCGGTGGTGGAATCGGAAGCTACTCTTTAGCTTCAATTGAGGATGCTAAAGACGTCTCAACATATTTATGGAACAATTTCTTGAGTGGCGAGTCATCTTCAAGACCATTTGGCGATGCTGTGTTAGATGGTATAGATTTCGATATTGAACTTGGCTCCACGCGATATTGGCAATACCTTGCACAATTTCTCAAGGAATATAACGGTGTTTATCTAAGTGCTGCTCCTCAGTGTCCAATTCCTGATAGATTCTTGGGTAGAGCCATCGAAACAGGACTTTTTGACTTTGTTTGGATTCAGTTCTATAATAATCCTCAATGTGATTATACTAATCATAACAAAAATAACCTTGTGAGTTCATGGGAAGAATGGAAAGCTACTATTCCAATTGGGGAGATATTTTTGGGGTTGCCGGCTGCTAAGGGCGCGGCTGGAAGCGGTTATATCCCGGCTGATGTGTTGACGTCTGAAATCCTACCTATCATTGAAAATACATCAAAGTATGGAGGGATTATGCTTTGGTCAAGATACTATGATGAGAGAACCGATTATAGCGCTTCCATTACAGCTAGTGTGTGA 879 0.4164 MAKNSHTLSLFLLFLTLVGTSHAGGIAIYWGQSSDEGTLYEACATRRYTHINIAFLYRFGNGRTPQLNLAGHCNPSTNSCTRIGKDIKYCQSRGITMLLSIGGGIGSYSLASIEDAKDVSTYLWNNFLSGESSSRPFGDAVLDGIDFDIELGSTRYWQYLAQFLKEYNGVYLSAAPQCPIPDRFLGRAIETGLFDFVWIQFYNNPQCDYTNHNKNNLVSSWEEWKATIPIGEIFLGLPAAKGAAGSGYIPADVLTSEILPIIENTSKYGGIMLWSRYYDERTDYSASITASV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04346 292 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 24 292 IPR001223 GO:0005975
Tsu01g04346 292 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 142 150 IPR001579 GO:0004553|GO:0005975
Tsu01g04346 292 SUPERFAMILY (Trans)glycosidases 21 288 IPR017853 -
Tsu01g04346 292 Pfam Glycosyl hydrolases family 18 26 279 IPR001223 GO:0005975
Tsu01g04346 292 CDD GH18_hevamine_XipI_class_III 24 288 IPR045321 -
Tsu01g04346 292 PANTHER ENDOCHITINASE 6 292 - -
Tsu01g04346 292 Gene3D Glycosidases 24 292 - -
Tsu01g04346 292 PANTHER ACIDIC ENDOCHITINASE 6 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04346 Tsu-Chr1 51416827 51417705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04346 10 292 Glycoside Hydrolase AT5G24090 58.824 2.56e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04346 K01183 - gmx:100809864 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04346 01 51416827 51417705 Tsu01g04346 01 51416827 51417705 ECH