Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04345 atggcATCCTTCAAACAACTTTCAATCCTATTACTCCCTTTGTTCCTCATTTCCCTATTCAAATCCTCATCTGCTGCAGGAATTGCTGTTTATTGGGGCCAAAATGGTGGTGAAGGTTCCTTAGCAGATGCTTGCAACACAAACAACTACCAATTTGTAAACATAGCTTTTCTTTCCACTTTTGGCAATGGCCAAACTCCAACACTAAACCTTGCCGGACATTGTGATCCAGCCTCGAACGGTTGCACCAAGTTTAGTTCTGAAATCCAAGCTTGCCAAGCTAAAGGTATCAAAGTGTTGCTCTCTCTCGGAGGCGGCGCCGGAAGCTACTCTTTATCATCATCTGATGATGCCACACAAGTAGCAAATTACCtatggaacaatttcttgggtGGCACGTCATCTTCAAGACCATTAGGTGATGCTGTTTTAGATGGAGTTGATTTTGAtattgaacttggttccacacAAAATTGGCAATACCTTGCACATTTTCTTAAAGGGTATAGTAGATATGGAAAAAAGGTGTATCTTGGTGCTGCTCCTCAGTGTCCAATTCCTGATAAATTTTTGGGCACTGCCCTTAAAACAGGACTTTTTGACTTTGTTTGGGTTCAATTTTACAACAATCCTCCTTGTCAATATAATGGAAACATAACTAACCTTGTGAATTCATGGAATACATGGACAAGAACTGTTCCAACCATGAAGATATTTTTGGGGTTGCCGGCGTCTACGGCGGCTGCAGGAAGTGGTTTTATTCCTGCAGATGTGTTGACTTCTGAAATTTTACCTGTGATTAAGAAATCAAGAAAGTATGGAGGAGTGATGCTTTGGTCAAGATTTCATGATTTGCAGAGTGGATATAGCACTTCTATTATTGGAAGCGTGTGA 894 0.3893 MASFKQLSILLLPLFLISLFKSSSAAGIAVYWGQNGGEGSLADACNTNNYQFVNIAFLSTFGNGQTPTLNLAGHCDPASNGCTKFSSEIQACQAKGIKVLLSLGGGAGSYSLSSSDDATQVANYLWNNFLGGTSSSRPLGDAVLDGVDFDIELGSTQNWQYLAHFLKGYSRYGKKVYLGAAPQCPIPDKFLGTALKTGLFDFVWVQFYNNPPCQYNGNITNLVNSWNTWTRTVPTMKIFLGLPASTAAAGSGFIPADVLTSEILPVIKKSRKYGGVMLWSRFHDLQSGYSTSIIGSV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04345 297 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 297 IPR001223 GO:0005975
Tsu01g04345 297 CDD GH18_hevamine_XipI_class_III 26 295 IPR045321 -
Tsu01g04345 297 Pfam Glycosyl hydrolases family 18 28 283 IPR001223 GO:0005975
Tsu01g04345 297 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Tsu01g04345 297 PANTHER ENDOCHITINASE 3 297 - -
Tsu01g04345 297 Gene3D Glycosidases 27 294 - -
Tsu01g04345 297 PANTHER ACIDIC ENDOCHITINASE 3 297 - -
Tsu01g04345 297 SUPERFAMILY (Trans)glycosidases 23 293 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04345 Tsu-Chr1 51410862 51416112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04345 3 297 Glycoside Hydrolase AT5G24090 61.409 8.20e-137 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04345 K01183 - gmx:100818728 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04345 01 51410862 51416112 Tsu01g04345 01 51410862 51416112 ECH