Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04344 atggcACCCTTCAAACAACTTTCAATTTTGTTATTCCCTCTGTTGCTAATTTCCCTATTCAAATCCTCATCTGCTGCAGGAATTGCAGTCTATTGGGGCCAAAATGGCGATGAAGGTTCCTTAGCAGATGCTTGCAACACAAACAACTACCAATTTGTAAACATAGCTTTTCTTTCCACTTTTGGCAATGGCCAAAATCCACAACTAAATCTTGCTGGCCATTGTAATCCAGCTATCATAAACAGTTGCACAAAGTTTAGTAGCGAAATCCAAACTTGCCAAAGCAAAGGAATCAAAGTGTTACTCTCTCTCGGAGGTGTTGCCGGAACCTACTCTCTTAGCTCGACCGCTGAAGCCAATGATCTAGCAAATTACCtatggaacaatttcttgggtGGCACGGCATCATCTTCAAGACCATTAGGTGATGCTGTTTTGGAtggaattgattttgatattgaaGCAGGTGGTGAACATTATGATGAACTTGCAAAAGCACTTAAAGGTTTTAAGTCACAAAAGACAGTTTACTTGTCTGCAGCACCACAATGTCCTTACCCTGATGCTCATTTGGATTCAGCTATTAGTACTGGTTTATTTGATTACGTTTGGGTTCAGTTTTATAATAATCCTCAATGTCAATACTCAAGTGATAACACTGCTAATCTTGTTAATGCTTGGAATCAATGGACTTCAAGTCAAGCTAAACAAGTGTTTTTAGGTGTTCCTGCTAATGATGCTGCTACATCTACTCCAAATAGGGGTTTTATTCCTTTTGATGTTTTGAACTCTCAAGTTCTTCCTGCTATTAAGGGTTCTGATAAATATGGTGGCGTCATGATTTGGAATAGATTCTTTGATAGTGATTATAGTAATGCTATTAAGGGCAGTGTTTAA 897 0.369 MAPFKQLSILLFPLLLISLFKSSSAAGIAVYWGQNGDEGSLADACNTNNYQFVNIAFLSTFGNGQNPQLNLAGHCNPAIINSCTKFSSEIQTCQSKGIKVLLSLGGVAGTYSLSSTAEANDLANYLWNNFLGGTASSSRPLGDAVLDGIDFDIEAGGEHYDELAKALKGFKSQKTVYLSAAPQCPYPDAHLDSAISTGLFDYVWVQFYNNPQCQYSSDNTANLVNAWNQWTSSQAKQVFLGVPANDAATSTPNRGFIPFDVLNSQVLPAIKGSDKYGGVMIWNRFFDSDYSNAIKGSV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04344 298 PANTHER ACIDIC ENDOCHITINASE 14 298 - -
Tsu01g04344 298 SUPERFAMILY (Trans)glycosidases 24 289 IPR017853 -
Tsu01g04344 298 Pfam Glycosyl hydrolases family 18 28 283 IPR001223 GO:0005975
Tsu01g04344 298 CDD GH18_hevamine_XipI_class_III 26 296 IPR045321 -
Tsu01g04344 298 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 146 154 IPR001579 GO:0004553|GO:0005975
Tsu01g04344 298 Gene3D Glycosidases 26 298 - -
Tsu01g04344 298 PANTHER ENDOCHITINASE 14 298 - -
Tsu01g04344 298 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 298 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04344 Tsu-Chr1 51391436 51392688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04344 1 298 Glycoside Hydrolase AT5G24090 56.066 5.83e-115 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04344 K01183 - gmx:100783329 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04344 01 51391436 51392688 Tsu01g04344 01 51391436 51392688 ECH