Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04307 ATGTTACTTCATCAAACCATTCTCCGAGCtcaatcaaaaccaaaatgtTTCATTCTCAAAAAACACTATTGTCTATGGTCAATGAAAAAAGACCCAGAATTAGAATCAGCACTATCAAGAAATCGACGCTGGATAATCAACAATCAAATCAAAAACATTATCCTACGTTACCCAAACAACGAAATCCCAATTGAAACTCTTCAGAAGAAATTCAAAACCCTAGATCTTCAAGGTAAAGCCTTAAACTGGATTTCTAAATACCCTTCTTGTTTCGATTATCATCAACGTCATGTTCGTCTTACTAAACGCATGATTGAACTTGTAAATGAAGAACAATCTATTAAGGATTCTCTTGAACCTGTTTTTGTTAAGCGTCTTGCGAAAATTCTTATGCTTTCCATTAATAATAGTTTGAATGTCCTTAAGATTAATGAGATTAAGAATAGTTTAGGGTTTCCTGATGATTATTTGATTAGGATTGTGCCGAAATATCCGGATTTGTTTCGAATTGTTAATGAAAGTGGGAGGAGAAGTTCTATGGCGATTGAATTGATTCATTGGAACCCTAATTTTGCTGTTTCGGAAGTTGAAGCTTTATCGttgaagaatggaggaaaagaACCGAATTTTTCGTGTTGTTTGCCTTCTAGTTGGGTGAAATCGTTGGAAAAGTTTCGAGATTTTGAATCGGTTCCTTATGTTTCGCCTTATTCGGATCCGAGAGGGTTGGTTGAAGGGTCGAAGGAAATGGAGAAAAGGAACGTGGGTTTGGTTCATGAGTTGTTGTCATTGACTCTTTGGAAGAAGATTTCGATTATGAAATTGGGTCATTTTAAAAGGGAGTTTTTTTTGCCTGATAAGTTGAATGTTTTGTTGCTTAAGCATCCTGGCATTTTCTATGTTTCTAATAAGTATAGGATTTATACTGTTCTACTTAGAGAAGGGTATGTTGGGTCTCAATTAGTTGATAAGGATCCTCTTGTGGTTGTTAAGGAGAAATTTGGGGAAATTATGCAGGAAGGACTTCATGAGTATAACCAAAGGCGGCGTCTTGTTAATATCGAAAAGAAGAGAAGCAAAGGTCTGCCTTTGACTAGGGTGGATGAGGATCACATGAATGgtagaagaaggagaagaaacaAGGAAGTttctgatgaagatgatgaggtTGATAGAGAAAAGGGCAATAAGTTGGGAGGGTTGCTTGACcctgaagaaagaaaaaggttttataaagttctttttgatgatgatggttcATGA 1263 0.3286 MLLHQTILRAQSKPKCFILKKHYCLWSMKKDPELESALSRNRRWIINNQIKNIILRYPNNEIPIETLQKKFKTLDLQGKALNWISKYPSCFDYHQRHVRLTKRMIELVNEEQSIKDSLEPVFVKRLAKILMLSINNSLNVLKINEIKNSLGFPDDYLIRIVPKYPDLFRIVNESGRRSSMAIELIHWNPNFAVSEVEALSLKNGGKEPNFSCCLPSSWVKSLEKFRDFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKLNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKKRSKGLPLTRVDEDHMNGRRRRRNKEVSDEDDEVDREKGNKLGGLLDPEERKRFYKVLFDDDGS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04307 420 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 13 393 - -
Tsu01g04307 420 Pfam Plant organelle RNA recognition domain 29 341 IPR021099 GO:0003723
Tsu01g04307 420 MobiDBLite consensus disorder prediction 363 401 - -
Tsu01g04307 420 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 13 393 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04307 Tsu-Chr1 50879944 50881925 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04307 - - mtr:MTR_3g029990 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04307 01 50879944 50881925 Tsu01g04307 01 50879944 50881925 ECH