Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04306 ATGGCGGATCGAGGAGAAGATGAGGATTTGCAAATGGCGATTCGGATGAGTATGACGCCTGAACCGAAGCGGAATAAACCGAGGGATGAAGTCGCCGGTGTTATTTCGGGGTTGCCGGAGGATTCGCCGGAATCTAAGACACGGAGACGGGAACTTATGGCAGCGGCTGCTGAGAAGCGGATGGCAGCGATTGTTAGGGTTTCGCCTTCGCCGGCTCCGTCCCCGGCGAGTAAAGGAGTAAAGAAGGAGGCTGAAGTTGTAAGGAGAGTGGAAGAGTTGCCACTCAGAAATGAGAGTTTGAGTAAGGAGCTTTCTGCAGAAGAAGCTAATAAATTATTTGTAATGGTGTTTGGAAGTGAAGTTTCAAAGGATATTCTAGCACAGTGGTGTAACCAGGGAATAAGGTTTAGCTCTGATCCTGAAACATCAATGGGCCTAGTGCAGCATGAAGGAGGTCCCTGTGGCGTTTTGGCAGCTATACAGGCATTCGTGTTCAAATACATTATATTCTTCAGTGATGGATTGAAAGAATCGCTGCGCATGCCGCAAAATCGGGGTCTAGGTGCGTCAAGTAAAAGTCACTCTGTTCCATCATATAATATTTCTTCACTCACTGAAGGTGTAAAAGTAAGTGCCCTTGTAAGAAGTATGggtgaaattttgtttttatgtggAAATAATAAAAGGGCTGTGATTGCAACTTTGAGAATTCCAGAGAATGATATCCAACGTTTTGAAGGAATCTCAGAGGAAGAGCAGGTTATTGCAAACTCACTTAAAGCTCTTTCTATTGAATCTGCCTTGGATCTGCTGAAAGTTCTTAGAGTTGAAACACACACATCAGAAACAACTGCTTTTCAGAGGCTTGAAGCACTTATTCCTTTATTCCAAAGTCGTATGGGGGCATTGCTTTTCCTAATCTCTGCTTTACTTTCTCGTGGACTGGATTTGGTTCAAAGTGACAGGGATGATCCCAGCCTACCGCTGGTTACTGCTCCTTTTGGCCATGCCTCCCAGGAAATTGTAAACCTACTACTCTGTGGGCAGGCTGTCCCTAATGTATTTGATGGAAGAATGGATTTAGGTGGGGGCATGTTTCTGAAAGGTATATCCCGAAATGTGGAAGTTGGATTTCTCACCCTGCTAGAATCGCTGAATTTTTGCAAGGTTGGTCAGTTTCTCAAAACCCCAAAATGGCCTATATGGGTTGTTGGGAGTGAATCCCATTACACAGTGTTGTTTGCTCTTGATCCCAGTGTTCAAAATGAGAATGAACTTGAAGGAAGGGAAACACAGATTCGCAGAGCTTTTGATGCACAAGATCAAAGTGGAGGTGGTGGCTTCATTAGTGTGGAGGGGTTCCATCAAGTCATCAGAGAAACAAATATTAAACTTCCGGCAGATAAACTAGATAACCTTTGCAGTGCAGGGTTCATTGTATGGAGTGAATTCTGGCAGGTAATTTTGGACCTAGACAAAAGCTTGGGAGGTTTGAAAGATTCATCAGGATTGATGGGTAAGAAGGTTTTCGAACTTTTCCATTTTAACGGAATTGCTAAATCAGATTTGAATGGGAGTCAAGTAAATTTTGGGGGTGAAACTCCACTGCAAAGACCCAGGCTCACAAAATTAAGCGTCTCGGTTCCCCCAAGGTGGACGCCTGAGGAATTTATGGCAGATGTGCAAGGTCCATCTGCTTCTGGTGCAAGTGACTCTGCTGGGAAAGACACTGAGGTATCTAAACCAGAGCCTGTCCAGCACGCGCCTTTGGTTGACTGCATAAGGACACGCTGGCCCCGTGCTGTCTGCAGCTGGTCAGGTGATCCTCCTAGTATAGTCTGA 1842 0.4473 MADRGEDEDLQMAIRMSMTPEPKRNKPRDEVAGVISGLPEDSPESKTRRRELMAAAAEKRMAAIVRVSPSPAPSPASKGVKKEAEVVRRVEELPLRNESLSKELSAEEANKLFVMVFGSEVSKDILAQWCNQGIRFSSDPETSMGLVQHEGGPCGVLAAIQAFVFKYIIFFSDGLKESLRMPQNRGLGASSKSHSVPSYNISSLTEGVKVSALVRSMGEILFLCGNNKRAVIATLRIPENDIQRFEGISEEEQVIANSLKALSIESALDLLKVLRVETHTSETTAFQRLEALIPLFQSRMGALLFLISALLSRGLDLVQSDRDDPSLPLVTAPFGHASQEIVNLLLCGQAVPNVFDGRMDLGGGMFLKGISRNVEVGFLTLLESLNFCKVGQFLKTPKWPIWVVGSESHYTVLFALDPSVQNENELEGRETQIRRAFDAQDQSGGGGFISVEGFHQVIRETNIKLPADKLDNLCSAGFIVWSEFWQVILDLDKSLGGLKDSSGLMGKKVFELFHFNGIAKSDLNGSQVNFGGETPLQRPRLTKLSVSVPPRWTPEEFMADVQGPSASGASDSAGKDTEVSKPEPVQHAPLVDCIRTRWPRAVCSWSGDPPSIV 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04306 613 Pfam Deubiquitinating enzyme MINDY-3/4, conserved domain 115 427 IPR025257 -
Tsu01g04306 613 SMART DUF4205_3 113 483 IPR025257 -
Tsu01g04306 613 PANTHER UNCHARACTERIZED 2 612 IPR039785 GO:0004843|GO:0071108|GO:1990380
Tsu01g04306 613 MobiDBLite consensus disorder prediction 560 586 - -
Tsu01g04306 613 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 5 24 IPR003903 -
Tsu01g04306 613 MobiDBLite consensus disorder prediction 1 49 - -
Tsu01g04306 613 SUPERFAMILY EF-hand 429 489 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04306 Tsu-Chr1 50870294 50878785 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04306 K22647 - gmx:100813222 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04306 01 50870294 50878785 Tsu01g04306 01 50870294 50878785 ECH