Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04066 ATGATGGCCGATTCATACATTGGTTGCTTGATTAGTTTAACGTCAAAAAGTGACATAAGATACGAGGGTGTTCTCTACATCATCAACACTGACTCTAGTATTGGTCTCATAAATGTGCGCTGTTTTGGAACTGAAGGAAGGAAAAAGGACGGTGCACAAATTCCGCCATGTGAAAAGGTCTATGATTATATACTGTTCCCAGCGATGGACATCAAGGATTTACAGGTGGAATCTTTTCCATATGTCCAGCCCACTACACCAACAAGTACCGATCCAGCTATTATTCAGTCTCAATATCCTCGCTTAGTCACACCATCTACAAGTTTACCTGTTGCAAATGGATCTTTGACTGATGCTAGTCCTCCTACAACAGAGCTTGGACAGCCATGGTCAAATTTTCAAGGGCCTTTGTATCAACCTGGGGGAAATGTACTGTCATGGGGAGCTTCTTCACCTCCTCCAAATGCAAATGGTGGTGGGCTTGCTATGCCAATATATTGGCAAGGATATTATGGTGCCCCAAATGGGCTTCATCAGTTACATCAGCAATCTTTGCTTCGACCTCCACCTGGCTTATCCATGCCCTCTTCTATGCAGCAGCCAATGCCCTCTTCTATGCAGCAGCCTTTGTATCAACCTGGGGCAAATGTAGTGTCATGGGGAGCTTCTTCGCCTGCTCCAAATGCAAATGTAGTGTCATGGGGAGCTTCTTCGCCAGCTCCAACTGCAAATGGTGGTGGACTTGATATGCAAATGTATTGGCAAGGATATTATGGTGCCCCAAATGACCTTCCTCAATTACATCAGCAATCTTTGCTTCGACATCAACCTGGCTTATCCATGCCTTCATCTATGCAGCAGCCAATGTCCTCTTCTATGCAACAACCTTTGTATCAACATGGGGGAAATGTAGTGTCATGGGGAGCTTCTTCGCCTGCTCCAAATGCAAATGGTGGTGGGCTTGCTATGCCAATGTATTGGCAAGGATATTATGGTGCCCCAAATGGGCTTCCTCAGTTACATCAGCAATCTTTGCTTCCACCTCCACCTGGCAAATCCATGCCTTCATCTATGCAGCAGCCAATGCCCTCTTCTATGCAGCAACCTTTGTATCAACCTGGGGGAAGTGTAGTGTCATGGGGAGCTTCTTCGCCTGCTCCAAATGCAAATGGTGGTGGGCTTGCTATGCCAATGTATTGGCAAGGATATTATGGTGCCCCAAATGGGCTTCCTCAGTTACATCAGCAATCTTTGCTTTGA 1260 0.4603 MMADSYIGCLISLTSKSDIRYEGVLYIINTDSSIGLINVRCFGTEGRKKDGAQIPPCEKVYDYILFPAMDIKDLQVESFPYVQPTTPTSTDPAIIQSQYPRLVTPSTSLPVANGSLTDASPPTTELGQPWSNFQGPLYQPGGNVLSWGASSPPPNANGGGLAMPIYWQGYYGAPNGLHQLHQQSLLRPPPGLSMPSSMQQPMPSSMQQPLYQPGANVVSWGASSPAPNANVVSWGASSPAPTANGGGLDMQMYWQGYYGAPNDLPQLHQQSLLRHQPGLSMPSSMQQPMSSSMQQPLYQHGGNVVSWGASSPAPNANGGGLAMPMYWQGYYGAPNGLPQLHQQSLLPPPPGKSMPSSMQQPMPSSMQQPLYQPGGSVVSWGASSPAPNANGGGLAMPMYWQGYYGAPNGLPQLHQQSLL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04066 419 Gene3D - 1 80 - -
Tsu01g04066 419 SUPERFAMILY Sm-like ribonucleoproteins 5 81 IPR010920 -
Tsu01g04066 419 CDD LSm14_N 3 76 IPR025609 -
Tsu01g04066 419 Pfam Scd6-like Sm domain 6 78 IPR025609 -
Tsu01g04066 419 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 284 362 - -
Tsu01g04066 419 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 2 202 - -
Tsu01g04066 419 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 208 290 - -
Tsu01g04066 419 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 367 418 - -
Tsu01g04066 419 MobiDBLite consensus disorder prediction 357 371 - -
Tsu01g04066 419 SMART LSM14_2 2 99 IPR025609 -
Tsu01g04066 419 MobiDBLite consensus disorder prediction 344 371 - -
Tsu01g04066 419 PANTHER SCD6 PROTEIN-RELATED 284 362 - -
Tsu01g04066 419 PANTHER SCD6 PROTEIN-RELATED 2 202 - -
Tsu01g04066 419 PANTHER SCD6 PROTEIN-RELATED 208 290 - -
Tsu01g04066 419 PANTHER SCD6 PROTEIN-RELATED 367 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04066 Tsu-Chr1 48532192 48534003 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04066 K18749 - gmx:100808030 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04066 01 48532192 48534003 Tsu01g04066 01 48532192 48534003 ECH