Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04014 ATGCAGTCAAGTCCTTTGCTTCTTGAGGAACCAATTAGGATGGCATCCATCCTAGAGCCATCCAAACCTACTTTCTTTCCAGCTATGACAAAAATTGTAGGCACACTTGGTTCGAAGTCACGATCGGTTGATACAATTACCCGATGCCTCGACGCAGGAATGTCAGTGGCAAGGTTTGACTTCTCATGGGGTGATCCAGAATACCACCAAGAGACATTGGAAAATTTAAGGGCTGCTATCAAAAGCACGAAAAAACTTTGCGCGATTATGCTAGATGTTGTAGGTCCAGAATTACAAGTTGTGAATAAAACTGATCGCCCAATTAAACTCGAAGCAGACACATTACTTGTCTTAACTCCGGATCAAAACAAAGAAGCTACTTCAAATCTCTTACCAGTAAATTTTAGTGGACTATCAAAGGCTGTGAAGAAGGGTGATACTATTTTTATTGGTAAATACCTGTTTACAGGAAGTGAAACAACTTCTGTATGGCTGGAGGTCAGTAAAGTGGATGGTGATGATGTAACTTGTGTCATAAAAAACGACGCTACACTTTCTGGATCATTGTATACTTTACATGTCTCTCAGATTCGTATTGATCTTCCTACTCTTACTGATAAGGATAAACAGGTGATACGCACATGGGGTGTTCAAAACAAAATAGACTTCCTCGCATTATACACTCGGCACGCTGAAGATGTTCGCCATGCCCGTGAATTTATCTCCAAATTCGAAGATCTTAAGCAGACACATATTTTTGCAAAGATTGAAAATGTAGAGGGATTGAAACATTTTGACGAGATATTGAGAGAAGCAGATGGTATCATTGTCTCTCGTGGAAATTTAGGGATAGATCTCCCACCTGAGAAGGTGTTTTTATTCCAAAAAGCTGCTATTTATAAGTGTAACATGGCTGGAAAGCCGGTTGTTGTCACTCGTGTGGTGGACACTATGACCGATAACCTAAGACCTACTCGTGCTGAAGCAACTGATGTTGCCAATGCAGTATTGGATGGCAGTGATGCAATTCTCCTTGGAGCAGAGACCCTAACAGGATTATACCCTGTAGAAACCATATCTACAGTCGGAAAAATTTGTGCCGAAGCAGAGAAagtttacaatcaagatttgtATTTTAAGAAGACTGTTAAACATGTGGGAGAGCCAATGAGCCACATAGAATCAATAGCTTCTTCTGCGGTTCGAGCCGCCGTCAAGGTTAAGGCATCTGTTATCATTTGCTTCACCTCATCTGGAAGGGCTGCAAGGTTGCTTGCTAAGTACAGACCAACCATGCCTGTGATATCTGTTGTCATTCCTCAATTGAAGACAAATCAACTCCGATGGACATTCACCGGCGCTATTCAGGCTAGGCAATCACTTATCGTGAGAGGTCTTTTCCCTATGTTGGCAGATCCTCGACACCCCTCTGAGTCTAGTAGCGCAACAAATGAATCGATTTTGAAGGTCGCTTTAGACCACGGCAAGGCTCTTGGCGTCATAAAGCCACACGACCGAGTTGTTGTTTGTCAGAAAGTTGGTGACTCGTCAGTTGTGAAGATTATTGAGCTTGAAGATTAG 1581 0.4187 MQSSPLLLEEPIRMASILEPSKPTFFPAMTKIVGTLGSKSRSVDTITRCLDAGMSVARFDFSWGDPEYHQETLENLRAAIKSTKKLCAIMLDVVGPELQVVNKTDRPIKLEADTLLVLTPDQNKEATSNLLPVNFSGLSKAVKKGDTIFIGKYLFTGSETTSVWLEVSKVDGDDVTCVIKNDATLSGSLYTLHVSQIRIDLPTLTDKDKQVIRTWGVQNKIDFLALYTRHAEDVRHAREFISKFEDLKQTHIFAKIENVEGLKHFDEILREADGIIVSRGNLGIDLPPEKVFLFQKAAIYKCNMAGKPVVVTRVVDTMTDNLRPTRAEATDVANAVLDGSDAILLGAETLTGLYPVETISTVGKICAEAEKVYNQDLYFKKTVKHVGEPMSHIESIASSAVRAAVKVKASVIICFTSSGRAARLLAKYRPTMPVISVVIPQLKTNQLRWTFTGAIQARQSLIVRGLFPMLADPRHPSESSSATNESILKVALDHGKALGVIKPHDRVVVCQKVGDSSVVKIIELED 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04014 526 Gene3D - 30 361 IPR040442 -
Tsu01g04014 526 SUPERFAMILY PK C-terminal domain-like 357 521 IPR036918 -
Tsu01g04014 526 Gene3D - 97 201 IPR015806 GO:0004743|GO:0006096
Tsu01g04014 526 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 9 375 IPR015813 GO:0003824
Tsu01g04014 526 Gene3D - 362 524 IPR036918 -
Tsu01g04014 526 TIGRFAM pyruv_kin: pyruvate kinase 30 515 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04014 526 PRINTS Pyruvate kinase family signature 252 278 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04014 526 PRINTS Pyruvate kinase family signature 279 303 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04014 526 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04014 526 PRINTS Pyruvate kinase family signature 347 363 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04014 526 PRINTS Pyruvate kinase family signature 328 346 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04014 526 PANTHER PYRUVATE KINASE 4 526 - -
Tsu01g04014 526 PANTHER PYRUVATE KINASE 4 526 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04014 526 SUPERFAMILY PK beta-barrel domain-like 96 187 IPR011037 -
Tsu01g04014 526 Pfam Pyruvate kinase, barrel domain 30 373 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu01g04014 526 Pfam Pyruvate kinase, alpha/beta domain 394 518 IPR015795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04014 Tsu-Chr1 47928232 47933478 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04014 K00873 - gmx:100804313 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04014 01 47928232 47933478 Tsu01g02284 01 24215727 24221468 ECH
Tsu01g04014 01 47928232 47933478 Tsu01g04014 01 47928232 47933478 ECH