Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04013 ATGGCACTCTCGCGCCTTCGTCAACCTATCATCTCTCATTCTATTCGTATCCTCACTTCTTCCACCAGATCCATTTCGAGTTCATCCTCTTTCCTTGTTTTTGTACGATCTAATTGGCAGTTTACTAATATGGTGATATCTATCAGGCCTGCATCTTGGTCTGGGCTTACTGGAGTTTGTGATAGACCTTTGAAGTCAAAGCGGATTGATGTCAGATTCTTCTCGTCTTCAGATTTTCCGCACGAAGTCCTTGGGATGCCAGCTTTATCTCCTACAATGACCCAAGGTAATATTGCAAAATGGAGGAAAAAAGAAGGGGACAAGGTCACAGTGGGTGATATACTATGCGAAATTGAAACTGACAAAGCTACACTTGAATTTGAGAGTCTTGAAGAgggATTTCTGGCAAAGATATTGGTACCTGAAGGTTCAAAGGATGTGCCAGTTGGACAACCAATTGCAGTAACAGTTGAGGATGAAAGCGACATTCAAAATGTTTCTGCTTCCGTTGGGGATGGGAGCGGAGTTGAAGAGAAGAAATCAACACATCAGGATGTCGCAGATGAGGAGAGTAAACCAGAATCAACTTCTACAATTGATACATCAGATCTTCCACCTCACGCCGTTCTTGGAATGCCTGCTTTGTCCCCAACAATGAACCAAGGAAACATTGCTAAATGGAATAAAAAGGAAGGAGACAAGATTGAAGTGGGTGACATATTATGTGAGATAGAGACAGACAAAGCTACCCTTGAATTTGAAAGTCTTGAAGAGGGGTACCTTGCTAAGATAGTTGCACCAGAAGGTTCAAAAGAAGTGGCAGTTGGACAGCCTATTGCAATAACAGTTGAAGATGCAGGTGATATTGAAGTTGTAAAGAATTCTATTAGCAGCAGCTCAGTTAACCAAAAGGAGAAGGCCACCCAACATGGCACTAAAAGTGaggtcaaaactcaaaaaaccaATACCGCACGAATCAGTCCAGCTGCAAAGTTGCTAATTATGGAATATGGATTGGATGCATCAACATTGAATGCAACTGGTCCTCTTGGCACCCTACTGAAAGGCGATGTTCTTTCTGCAATTAAATCAGGAAAATTGTCTCCAAAACCTGCTTCATCTAAAGCAAAGGCATCGTCATCATCTCAAAGTCATCAAGTTGCGGCTTCACAAGAGTCAAAGTCTAACTTAAAGCAGTCAGATGCTTATGAAGATTTTCCTAATAGTCAAATTCGCAAGGTGATTGCCAAGAGGTTATtggaatcaaaacaaaatacaccacACTTATATTTATCATCAGATGTTACACTGGATCCACTTCTTTCCCTTAGAAAGGATCTTAAAGAGCAGTATGACGTTAAAGTTTCAGTGAATGACATTATTATCAAAGTTGTAGCGGCTGCTCTCAGAAATGTACCAGAAGCGAACGCATACTGGAATGAAGAGAAAGGCGAGGTCATCTTATGCGATTCTATTGACATATCAATAGCAGTTGCCACTGAGAAGGGCTTGATGACTCCAATATTAAAAAATGCCGATCAAAAGACAATATCTGCCATATCCTCAGAGGTCAAGGAACTAGCTGCAAAAGCACGTGAAGGCAAGTTGAAGCCGCAAGAATTCCAAGGGGGCACTTTTAGTATTTCAAACTTAGGAATGTATCCCGTGGATAAATTCTGTGCTATTATAAACCCCCCACagGCTTGCATTCTTGCCGTAGGGAGAGGTATCAAAGTTGTGGAACCAGTAATCGGAGCTGATGGAATTGAGAAGCCGTCCGTTGCTACTAAGTTGAACTTAACATTGTCTGCCGACCATCGCGTCTTTGATGGCAAAGTTGGGGGTGCATTCCTCTCTGCTCTAAAGTCAAACTTCGGTGATATAAAACGACTTCTTTTATAA 1902 0.4069 MALSRLRQPIISHSIRILTSSTRSISSSSSFLVFVRSNWQFTNMVISIRPASWSGLTGVCDRPLKSKRIDVRFFSSSDFPHEVLGMPALSPTMTQGNIAKWRKKEGDKVTVGDILCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAVTVEDESDIQNVSASVGDGSGVEEKKSTHQDVADEESKPESTSTIDTSDLPPHAVLGMPALSPTMNQGNIAKWNKKEGDKIEVGDILCEIETDKATLEFESLEEGYLAKIVAPEGSKEVAVGQPIAITVEDAGDIEVVKNSISSSSVNQKEKATQHGTKSEVKTQKTNTARISPAAKLLIMEYGLDASTLNATGPLGTLLKGDVLSAIKSGKLSPKPASSKAKASSSSQSHQVAASQESKSNLKQSDAYEDFPNSQIRKVIAKRLLESKQNTPHLYLSSDVTLDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPEANAYWNEEKGEVILCDSIDISIAVATEKGLMTPILKNADQKTISAISSEVKELAAKAREGKLKPQEFQGGTFSISNLGMYPVDKFCAIINPPQACILAVGRGIKVVEPVIGADGIEKPSVATKLNLTLSADHRVFDGKVGGAFLSALKSNFGDIKRLLL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04013 633 SUPERFAMILY Single hybrid motif 84 170 IPR011053 -
Tsu01g04013 633 SUPERFAMILY Single hybrid motif 209 296 IPR011053 -
Tsu01g04013 633 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 325 362 IPR004167 GO:0016746
Tsu01g04013 633 Gene3D - 325 366 IPR036625 GO:0016746
Tsu01g04013 633 SUPERFAMILY CoA-dependent acyltransferases 399 633 - -
Tsu01g04013 633 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 403 632 IPR001078 GO:0016746
Tsu01g04013 633 Gene3D - 76 181 - -
Tsu01g04013 633 Gene3D - 204 308 - -
Tsu01g04013 633 MobiDBLite consensus disorder prediction 373 402 - -
Tsu01g04013 633 Pfam e3 binding domain 325 359 IPR004167 GO:0016746
Tsu01g04013 633 ProSiteProfiles Biotinyl/lipoyl domain profile. 207 283 IPR000089 -
Tsu01g04013 633 Gene3D - 387 633 IPR023213 -
Tsu01g04013 633 Pfam Biotin-requiring enzyme 210 281 IPR000089 -
Tsu01g04013 633 Pfam Biotin-requiring enzyme 84 155 IPR000089 -
Tsu01g04013 633 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 106 135 IPR003016 -
Tsu01g04013 633 MobiDBLite consensus disorder prediction 295 322 - -
Tsu01g04013 633 PANTHER PYRUVATE DEHYDROGENASE PROTEIN X COMPONENT, MITOCHONDRIAL 204 629 - -
Tsu01g04013 633 PANTHER PYRUVATE DEHYDROGENASE PROTEIN X COMPONENT, MITOCHONDRIAL 78 195 - -
Tsu01g04013 633 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 232 261 IPR003016 -
Tsu01g04013 633 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 210 624 IPR006257 GO:0004742|GO:0006090|GO:0045254
Tsu01g04013 633 CDD lipoyl_domain 86 155 - -
Tsu01g04013 633 MobiDBLite consensus disorder prediction 164 206 - -
Tsu01g04013 633 ProSiteProfiles Biotinyl/lipoyl domain profile. 81 157 IPR000089 -
Tsu01g04013 633 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 319 364 IPR036625 GO:0016746
Tsu01g04013 633 MobiDBLite consensus disorder prediction 176 196 - -
Tsu01g04013 633 MobiDBLite consensus disorder prediction 365 402 - -
Tsu01g04013 633 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 204 629 IPR045257 GO:0006086|GO:0045254
Tsu01g04013 633 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 78 195 IPR045257 GO:0006086|GO:0045254
Tsu01g04013 633 CDD lipoyl_domain 212 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04013 Tsu-Chr1 47909446 47928053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04013 201 633 Acyl Lipid Metabolism Gene Families AT3G13930 43.107 1.65e-111 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04013 K00627 - gmx:100800280 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04013 01 47909446 47928053 Tsu01g04013 01 47909446 47928053 ECH