Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03855 atggcgAAAAACATGATTCTTCTTCTACTTTTCTTTTGCTTTCATGTAAACGCCATTTTAGACCCAACAGATTTTCTAGCTCTACAATCTATTCGTAAATCTCTTGAAGACATGCCTGGTTctgatttcttttcttcttgggATTTCACTTCTGATCCATGCAACTTCTCCGGCGTTTTCTGTGATTCCGATAAAGTTATTTCTCTCAATCTCGGTGATCCTAGAGCCGGTTCAGCTGGTTTAACCGGTCGACTCGACCCGGCTATCGGTAAGCTTTCTTCTCTAACTGAGTTTACTGTTGTTCCGGGAAGAATTTACGGTCCTCTACCTCAAAACATTTCCAATTTGAAGAATCTCAGGTTTCTTGGTGTTAACAGAAACTTCATCTCCGGTGAGATTCCGATGGAGTTAGGTGAGTTACGCAGTCTGAGAACTATTGATCTAAGTTATAATCAGCTCACCGGAAAAATTCCTCCGACGGTTGGATCATTACCGGGTCTAACAAATCTCATTCTCTGTCATAACCGTTTATCCGGTTCAATTCCCCGGTTTGATTCTCAGAGTTTAAGCCGGTTGGACCTGAAACACAACACTCTCACCGGTTCAATTGGTCCAAATTCTCTTCCTCCGTCGCTTCAGTATCTCTCATTGTCGTGGAATCAACTCACCGGTTCAATGGACCGGGTTTTAACTCGGCTTGAACAGTTAAACTATTTGGACCTTAGTTTAAACCAGTTCACTGGAACCGTCCCGGGTCGGTTATTCTCATTTCCACTGACGAATCTCCAGTTACAAAGAAATCAGTTTACCGGTTCAGTTGAACCGGTTGATCAAGTTGCAATACCAACCGTTGATCTAAGTTACAACAGATTATCGGGTCAGATTTCGCCTATGTTAGCTAGCGTGCAGAATCTGTACTTGAATAATAACCGGTTTACGGGTCGGGTACCCGCTAGTTTTGTGGAGCGGTTACTTGATGCGAGTATACAGATATTGTATTTGCAGCATAATTATCTAACGGGAATTGAGATTAGTCCAACGGCTGTGATTCCAGAAAGAAGTTCACTGTGTATGCAGTATAATTGTATGGTCCCTCCCGTAGAGACTCCTTGCCCTTTGAGAGCTGGAAAACAGAAAACAAGGCCTACTACACAGTGCAATCAGTACAAGGGATGA 1176 0.4192 MAKNMILLLLFFCFHVNAILDPTDFLALQSIRKSLEDMPGSDFFSSWDFTSDPCNFSGVFCDSDKVISLNLGDPRAGSAGLTGRLDPAIGKLSSLTEFTVVPGRIYGPLPQNISNLKNLRFLGVNRNFISGEIPMELGELRSLRTIDLSYNQLTGKIPPTVGSLPGLTNLILCHNRLSGSIPRFDSQSLSRLDLKHNTLTGSIGPNSLPPSLQYLSLSWNQLTGSMDRVLTRLEQLNYLDLSLNQFTGTVPGRLFSFPLTNLQLQRNQFTGSVEPVDQVAIPTVDLSYNRLSGQISPMLASVQNLYLNNNRFTGRVPASFVERLLDASIQILYLQHNYLTGIEISPTAVIPERSSLCMQYNCMVPPVETPCPLRAGKQKTRPTTQCNQYKG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03855 391 Pfam Leucine Rich repeat 210 224 IPR001611 GO:0005515
Tsu01g03855 391 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Tsu01g03855 391 Gene3D Ribonuclease Inhibitor 187 363 IPR032675 -
Tsu01g03855 391 PANTHER LRR RECEPTOR-LIKE KINASE 6 388 - -
Tsu01g03855 391 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 6 388 - -
Tsu01g03855 391 SUPERFAMILY L domain-like 35 363 - -
Tsu01g03855 391 Gene3D Ribonuclease Inhibitor 23 186 IPR032675 -
Tsu01g03855 391 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03855 Tsu-Chr1 46357645 46359325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03855 81 321 Receptor kinase-like Gene Family AT5G62230 31.727 2.03e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03855 - - gmx:100794756 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03855 01 46357645 46359325 Tsu01g03855 01 46357645 46359325 ECH
Tsu07g03522 07 41402301 41403597 Tsu01g03855 01 46357645 46359325 PCT