Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03166 ATGTTCAACTTCTTCAAAACATTATCATGCCTTCAATGTTTCCTCTTTCTATTCTTTAATGTTTCTCTGTGTTTCTCTTCTTCAAATGGGAACTTCACTTTTTGTTTGGataatcacaaaataaaaaacttcacTGCTTTCCCTTACAATGAATATGATCAACCCTCTGCTTATAATTACTACAAAATTCTTAACTTTTCAATTCAAAACCTTCGGTTCATAGAACCTAATATTCCTAAGCCGGTCGCAATTGTACTTCCGGAGAGTTTGGAGCAGCTACGGAAAAGTGTAGCATGCTGTAGAGAAAATTCTTTGGGAATAAGAGTGAGAAGTGGTGGACATAGCTATGAAGGAACTTCTTCTGTTGCCGATGATGGTACTCTTTTCGTCATCATTGACATGATGAATTTAAACAATGTTAGGGTGGATATTAAGACAGAAACAGCGTGGGTTGAAGGCGGTGCGACATTGGGAGAGACTTACTATGCTATCTCTCAAGCAAGTGATGCATATGGATTCTCAGCTGGGTCATGTCCAACCGTAGGAGTCGGCGGACATATCAGTGGTGGTGGATTTGGATTGTTGTCTAGAAAACACGGACTTGCAGCCGATAATGTGGTTGATGCCCTTCTTGTTGATGCGAATGGGCAATTATTAGACCGCAAAACCATGGGAGAAGATGTGTTTTGGGCTATTCGAGGAGGAGGAGGTGGTCTTTGGGGAATTGTATATGCATGGAAAATCAAGTTGTTGAAAGTGCCTCAAATTGTTACTAGTTTTATTGTATCTAGAACAGGCACAAAAAGTCATATTGCTAAGCTAGTGAACAAATGGCAATATGTGGCACCAAATTTGGATGACGAGTTTTACTTGTCATGTTTTGTTGGTGCTGGTTTGCCTGAAGCTAAAAAAATAGGCTTATCAACAACATTTAAAGGGTTATATCTTGGTTCTAAGTCCAAGGCCATATCTATGTTGAAGAAGGCTTTTCCTGAATTAGGTGTTTCAGAAGAAGAATGTAAAGAAATGAGTTGGATTGAGTCAGTTGTTTTCTTCTCTGGATTAACTGTTGGAGCTTCTGTTTCTGACTTGAGGAATAGGTATATGCAAGATAAAGAATATTTCAAGGCAAAATCAGATTTTGTAAGGAGCTATGTTCCTCTTGTAGGTATAGAAACTGCATTGGATTTTCTTGAAAAGGAGCCTAAAGGGTATGTTATTTTGGATCCTTATGGTGGGATTATGCATAATATAAGCAGTGAATCCATTGCTTTTCCACACAGAAAAGGAAACATTTTTACAATTCAGTACTTGATTTATTGGAAAGAAGTGGACAATGACAAAAGTAGTGAATATATTGATTGGATAAGAGGATTCTATTCTTCTATGACTCCTTTTGTTTCATGGGGTCCAAGGGCTGCATACATTAATTACATGGATTTTGACCTTGGAGTAATGAAGCTGATTAGTACTAATGATGTGATTAAAGCAAAGGTTTGGGGTGAAAAGTACTTCTTGAATAACTATGATAGACTTGTGAGGGCAAAAACTTTGATTGATCCTAATAATGTGTTCACCAATGAACAAGGCATTCTTCCTATGCCATTTGCTAGTTCAAATGCCAAAGCACTTGGTTCATAA 1641 0.3723 MFNFFKTLSCLQCFLFLFFNVSLCFSSSNGNFTFCLDNHKIKNFTAFPYNEYDQPSAYNYYKILNFSIQNLRFIEPNIPKPVAIVLPESLEQLRKSVACCRENSLGIRVRSGGHSYEGTSSVADDGTLFVIIDMMNLNNVRVDIKTETAWVEGGATLGETYYAISQASDAYGFSAGSCPTVGVGGHISGGGFGLLSRKHGLAADNVVDALLVDANGQLLDRKTMGEDVFWAIRGGGGGLWGIVYAWKIKLLKVPQIVTSFIVSRTGTKSHIAKLVNKWQYVAPNLDDEFYLSCFVGAGLPEAKKIGLSTTFKGLYLGSKSKAISMLKKAFPELGVSEEECKEMSWIESVVFFSGLTVGASVSDLRNRYMQDKEYFKAKSDFVRSYVPLVGIETALDFLEKEPKGYVILDPYGGIMHNISSESIAFPHRKGNIFTIQYLIYWKEVDNDKSSEYIDWIRGFYSSMTPFVSWGPRAAYINYMDFDLGVMKLISTNDVIKAKVWGEKYFLNNYDRLVRAKTLIDPNNVFTNEQGILPMPFASSNAKALGS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03166 546 Pfam FAD binding domain 82 219 IPR006094 GO:0050660
Tsu01g03166 546 Gene3D - 142 533 IPR016169 -
Tsu01g03166 546 PANTHER OS08G0158400 PROTEIN 16 538 - -
Tsu01g03166 546 Gene3D - 31 137 IPR016167 -
Tsu01g03166 546 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 16 538 - -
Tsu01g03166 546 SUPERFAMILY FAD-binding/transporter-associated domain-like 65 254 IPR036318 GO:0050660
Tsu01g03166 546 ProSiteProfiles PCMH-type FAD-binding domain profile. 77 253 IPR016166 GO:0071949
Tsu01g03166 546 Pfam Berberine and berberine like 474 531 IPR012951 GO:0016491|GO:0050660
Tsu01g03166 546 Gene3D - 256 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03166 Tsu-Chr1 39100147 39101787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03166 55 537 Miscellaneous Gene Families AT4G20820 44.033 5.74e-132 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03166 - - gmx:100790761 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03166 01 39100147 39101787 Tsu01g03166 01 39100147 39101787 ECH