Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02358 atgGCACCTAAACACGATGCAATTTCTGAAATTTCACCGGCCAAAGAAAATTGGAATCTGATAGTCAAAGTCGTACGTCTTTGTACGCAACATTTTCGATCTCATTTCTTCCTCTTTCATTTCACATTCTTCTACACTCTCAAATCTCAATCATACAAAGATATGGATACCTTTCTCTTCACCTCAGAATCTGTAAACGAAGGTCACCCTGACAAGATCTGTGACCAGGTCTCCGATGCCATCCTTGATGCATGTTTGGAACAAGATCCAGAGAGCAAGGTTGCCTGTGAGACCTGCACTAAAACTAACATGGTTATGGTCTTTGGTGAAATCACAACCAAGGCAAATGTGAACTATGAGAAAATAGTCCGTGACACTTGCAGGGGTATCGGGTTTGTGTCCGATGATGTTGGTCTTGATGCTGACAAATGCAATGTTCTTGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAAGGTGTTCATGGTCACTTGTCCAAAAAACCTGAGGAAATTGGAGCTGGTGACCAAGGTCACATGTTTGGCTATGCCACAGATGAAACACCTGAACTAATGCCACTAACACACGTGCTTGCTACTAAAATTGGTGCCAAGCTCACTGAAGTTAGAAAGAATAAGACATGCCCATGGGTTAGGCCTGATGGTAAAACCCAAGTGACTGTTGAATACAAGAATGATAATGGAGCTATGGTCCCTATTCGTGTGCATACAATCCTCATCTCAACTCAACACGATGAAACCGTCACAAATGAACAGATTGCCAAAGATTTGAAAGAGCATGTCATTAAACCTGTTGTCCCAGCTGAATACCTTGATGACAAGACCATCTTTCACCTTAACCCTTCAGGTAGGTTTGTGATTGGTGGACCCCATGGAGATGCAGGACTGACTGGAAGGAAGATCATTATTGATACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCTTTCTCAGGAAAGGATCCAACCAAGGTGGATAGAAGTGGTGCATACATCGTTAGGCAAGCTGCAAAAAGTGTTGTAGCTTCAGGGCTTGCACGTCGGTGTATTGTGCAGGTTTCTTATGCAATTGGAGTGCCAGAGCCACTTTCTGTGTTTGTGGACACCTACAAAACTGGAAAGATTCCTGATAAGgatattttggttttgattaaGGAGAATTTTGATTTCAGGCCTGGAATGATTGCTATCAATCTTGACCTCACAAGAGGTGGCAAATTCAGGTACCAGAAGACTGCTGCATATGGACATTTTGGACGTGATGATCCCGATTTCACATGGGAGACTGTGAAGATACTCAAACCCAAGGCTTGA 1335 0.43 MAPKHDAISEISPAKENWNLIVKVVRLCTQHFRSHFFLFHFTFFYTLKSQSYKDMDTFLFTSESVNEGHPDKICDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANVNYEKIVRDTCRGIGFVSDDVGLDADKCNVLVNIEQQSPDIAQGVHGHLSKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKIGAKLTEVRKNKTCPWVRPDGKTQVTVEYKNDNGAMVPIRVHTILISTQHDETVTNEQIAKDLKEHVIKPVVPAEYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKENFDFRPGMIAINLDLTRGGKFRYQKTAAYGHFGRDDPDFTWETVKILKPKA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02358 444 PIRSF MAT 52 444 IPR002133 GO:0004478|GO:0005524|GO:0006556
Tsu01g02358 444 Pfam S-adenosylmethionine synthetase, central domain 171 292 IPR022629 GO:0004478|GO:0006556
Tsu01g02358 444 SUPERFAMILY S-adenosylmethionine synthetase 294 440 IPR022636 GO:0004478|GO:0006556
Tsu01g02358 444 SUPERFAMILY S-adenosylmethionine synthetase 57 163 IPR022636 GO:0004478|GO:0006556
Tsu01g02358 444 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 55 444 - -
Tsu01g02358 444 Gene3D - 171 435 - -
Tsu01g02358 444 Pfam S-adenosylmethionine synthetase, C-terminal domain 294 435 IPR022630 GO:0004478|GO:0006556
Tsu01g02358 444 CDD S-AdoMet_synt 59 438 - -
Tsu01g02358 444 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 55 444 IPR002133 GO:0004478|GO:0005524|GO:0006556
Tsu01g02358 444 SUPERFAMILY S-adenosylmethionine synthetase 169 293 IPR022636 GO:0004478|GO:0006556
Tsu01g02358 444 Pfam S-adenosylmethionine synthetase, N-terminal domain 58 155 IPR022628 GO:0004478|GO:0006556
Tsu01g02358 444 Hamap S-adenosylmethionine synthase [metK]. 56 444 IPR002133 GO:0004478|GO:0005524|GO:0006556
Tsu01g02358 444 Gene3D - 65 333 - -
Tsu01g02358 444 TIGRFAM metK: methionine adenosyltransferase 59 441 IPR002133 GO:0004478|GO:0005524|GO:0006556
Tsu01g02358 444 ProSitePatterns S-adenosylmethionine synthase signature 1. 173 183 IPR022631 GO:0004478|GO:0006556
Tsu01g02358 444 ProSitePatterns S-adenosylmethionine synthase signature 2. 320 328 IPR022631 GO:0004478|GO:0006556
Tsu01g02358 444 Gene3D - 58 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02358 Tsu-Chr1 25325349 25328945 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02358 K00789 - csin:114296156 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02358 01 25325349 25328945 Tsu01g02358 01 25325349 25328945 ECH
Tsu07g03903 07 45180102 45183059 Tsu01g02358 01 25325349 25328945 PCT