Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02354 ATGGCTTTTCCTTTGATATTTCTCTTTgctattttattctttatggTTCCTCCAAACAATGCCTATTGGCCACCTTCACCTGGCTACTGGCCAAGTTCAAAAGTAAGGTCTATGAATTTTTACAGAGGTTTTAAAAACCTATGGGGACCTTCACACCAAAGCATGGATCAACATGGATTAACAATTTGGCTTGATAGAACCTCAGGAAGTGGATTTAAGTCGTATCGTCCATTTCGATCCGGCTACTTTGGTGCTTCAATTAAGCTTCATCCTGGCTACACTGCAGGAGTCATTACATCTTTTTATCTTTCTAATGATCAAGCACATCCAGGATTTCATGATGAAGTAGACATTGAGTTTCTAGGGACAACATTTGGAAAGCCATATACTTTGCAGACCAATGTTTACATAAGAGGGAGTGGAGATGGCAAAATTATTGGCAGAGAAATGAAATTTCATTTATGGTTTGATCCTACCAAAAACTTTCATCACTATGCTATACTTTGGAATCCTAAGGAATTAATATTCCTAGTGGATGATGTGCCCATAAGGAGATACCCAAGGAAGAGTGATGCAACATTTCCACTAAGACCAATGTGGGTTTATGGTTCAATTTGGGATGCTTCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTACAAATACCAACCTTTTGTTGCAAAGTACACAAACTTCAAGGCTAGTGGTTGCTCAGCCTATGCATCGCATTGGTGCCGTCCAGCCTCGGCCTCACCGTATCGGTCTGGCGGCTTGACTCGACAACAACATTGGGCTATGAGTTGGGTTCAAAGACATCACATGGTTTATAACTATTGTCAAGATCCTAAAAGAGACCATAGACTAACACCTGAGTGTTGGGGTTAA 891 0.3984 MAFPLIFLFAILFFMVPPNNAYWPPSPGYWPSSKVRSMNFYRGFKNLWGPSHQSMDQHGLTIWLDRTSGSGFKSYRPFRSGYFGASIKLHPGYTAGVITSFYLSNDQAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKNFHHYAILWNPKELIFLVDDVPIRRYPRKSDATFPLRPMWVYGSIWDASSWATEDGKYKADYKYQPFVAKYTNFKASGCSAYASHWCRPASASPYRSGGLTRQQHWAMSWVQRHHMVYNYCQDPKRDHRLTPECWG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02354 296 PIRSF EndGlu_transf 7 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu01g02354 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 253 294 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tsu01g02354 296 Gene3D - 20 294 - -
Tsu01g02354 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4 295 - -
Tsu01g02354 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 295 IPR044791 GO:0004553
Tsu01g02354 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 10 231 IPR000757 GO:0004553|GO:0005975
Tsu01g02354 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 62 282 IPR013320 -
Tsu01g02354 296 Pfam Glycosyl hydrolases family 16 42 223 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02354 Tsu-Chr1 25298029 25300472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02354 1 294 Glycoside Hydrolase AT3G44990 66.327 5.16e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02354 K08235 - gmx:100796698 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02354 01 25298029 25300472 Tsu01g02354 01 25298029 25300472 ECH
Tsu07g03907 07 45228648 45231121 Tsu01g02354 01 25298029 25300472 PCT