Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02118 ATGGCGGATACAGTCACGTATCATTCAACATCCATTCCCAAATTTGACGGTTTCTATGATCACTGGGCCGAATTGATGGAAAGTTTGCTACGCTCGAAAGATTATTGGAGTTTGATCGAAACTGGCATTGTTCTTGCTCCAGCAAATCCCACACCAGAACAAACTCAAGCTGCAACTACGAGTCGTTTGAATAATCTTAAGGTGAAGAATTACCTCTTTCAAGCAATTGATCGTTCCATTCTTGAAAGAGGTACTTCCAAGCAAATATGGGAATCTATGCGTCAGAAATTTCAAGGATCTAACAAGGTGAAACGAGCTCAGTTACAAAGTCTTAGGCGAGAGTTTGAAGTTCTCTGGATGAAGGATGATGAATCAGTGAATGATTTCTTCTCCATAACCCTTGTTATTGCAAACAAGATGACAACACATGGTGAGAGCTTAACACAGAGTCAAATAGTTGAGAAGATCTTGCGATCTATGACTGCAAAATTTGAGTATGTTGTGTGTTCTATTGAACAATCCAGTGACACCACCACCATGTCTATTGATGAACTACAAAGCAGTTTGTTAGTTCAAGAGGGGAGAATGAATCATCACAAAGCCAAGCAAGAAGAACAAGCGCTCACGATTACAAATCTTGGGAGAGGTAATGGCAATCCTAGAGGTAGAGGTAGAGGTTCATCCTCAAGAGGTCGTGGTAGAGGAAGGACAAGCAATTCTAAAGAGTATGTGGAATGCTACAAGTGTCACAAGCTAGGTCACTATCAGAGTGAGTGTCCTAATTGGGAAGAGAATGCCGATTTTGCTGCTGAATTCAATGAACATGAAGAAATTCTCCTAATGACTCAGCAACAATCGTGTATAAACACCTCTGATCAGGTTTGGTTTCTTGACTCTGGATGCAGTAATCATATGATTGGCACAAAAGAATGGTTATTTGACTTTGATGACAAGTTTAGAGAGACTGTAAAACTTGGAGATAATTCAACTATGCAAGTAATGGGAAAAGGTAATGTGAAACTATATCTTGCTGGTAAAGGTCATCTTAGCTTTAAGGGTTTGAATGCTTTAGCCAAAAGAGAAATGGTAAAAGGTTTACCTATGGTCAAAGATATTCAAACTGTGTGCTCTGATTGTGTTGTAAGTACGCAACACATAGATTCATTTCCCAAAGATACCTCATGGAGAGCAGCTACCAAACTTGAGTTGATACATTTAGACATTTGTGGTCCCATTAACCCTACATCAAATGGAGGAAATAGATACTTTATTGCCTTCACTGATGATTTGACCAAGAAGACATGGACATATCCCTTGAAAGACAAGGAAAGTGCCTTTGAATGTTTCAAAATGTTTAAAGCACTTGTAGAGAAAGAATCAAACTGTGCAGTCAAGTGTTTAAGAATTGATAGAGGTGAAGAGTTCACATCAAGCAATTTTGATGAGTTTTGTAGTGAACATGGCATCAAGAGACAATTGACTGCAACATATACTCCTCAGCAAAATGGAGTATCtgagaggaaaaatagaacACTATTGAACATGGTTAGGAGCATGCTAGCTGGTAAGAATGTTCCAAAGAGATTTTGGCCAGAAGCAGTTGTATGGGCAACATATGTGATCAATAGAAGTCCAACATTATCTGTGAATGATATGACTCCAGAAGAAGCATGGAGTAGCACAAAACCCTTAGTCTCACACTTCAAAGTATTTGGTTGTATAGGATATGTACACATTCCAGATACTCAGAGAAAGAAACTTGATCCTAAAGGCATCAAGTGTGTTCTTTTAGGTGTTAGTGAAGAATCCAAAGCATACAAACTCTATGATCCACTGCAAAAGAAAATTATCATTAGCAAGGATGTGGTATTTGATGAGAGCAATGGATGGAACTGGGATGAAAAGGCTAAAACTCAATCACCTCAGGTAATAGAAGAAACTATCAGTGAACATAGTGGTCAAGGAATCACTGTTGAAGATGATCAACAACGTGAAGAGCACACACCAATTGATGAAAATGAGTATGAAGAGAATTATGAAGACAATGGTGATGTGAATACCACCATCAGGCAGCTACCCCCTAGAGCAAGGAAACCACCTGGCTGGGTACAAGACTATGTCACAAATATAGAAGACAATGACATAGAAGCAATGCAGAATTTGGTTGTGTTCCGTGATGACAGTGATCCTCACAACTATGAAGAAGCATCTAAAATGACTGTATGGAGGAAAGCAATGGATCAAGAAATTGAATCCATTGAAAGAAACAACCCATGGGAGCTAGTGTTTCTTCCAAAAGAAGCCAAGAGAATTGGTGTCAAATGGATTTTCAAAACAAAGTACAATGAAAATGGAGAAGTTGAGAAGTACAAAGCAAGACTTGTGGCTAAGGGATATTCACAACAGTATGGCATTGACTTCAATGAAGTatttgccccagttgctaggTGGGACAGTATAAGAGCTATATTAGTTGTAGCAGCATCACAAGGTTGGTATGTTTATCAATTtgatgtaaaaagtgctttCTTACATGGTGAATTGCAAGAGAATGTTTATGTTGATCAACCACCAGGATACTTTAAGAAGGATGGGATGGTGTATAAGCTGAGAAAAGCATTGTATGGgcttaaacaagctccaagagcttgCCCCATAGTACCTGGGAACAagttaacaaaagatgaaagtGGAAAACTGGTTGATGCTACTAGCTTCAGACAAATGACAGGTTGCTTAATGTACTTGCTAGCTAGCGAACCTGATCTCACTTTCTCAGTGTGTTTAATTGCAAGATACATGGAAAGACCCACTGAACTTCATTTAGCAGCTGCCAAGAGAGTGTTGAGGTATCTCAAAGGATCCTTAGACTTTGGGATTCTATACAAAAGAAACTGTGAGTTGAGATTGGAAGGATGGTCTGATAGTGACTATGCTGGTGACgtagatgacagaaaaagtacctCAGGATATGTGTTCATGCTTGGATCCAGTCCTATATCATGGTCATCAAAGAAGCAGCCAATTGTCACCCTCTCCACTACTGAAGCAGAGTATGTCTCAGTTGCTTCTTGTGCCTGTCAAGCCATATGGCTGAGAAGAATTCTGGATCATTTGTTACAAACTCAAGAGTGTACCACTATACATTGTGATAATAGTTCTTCTATTAAGCTCTCAAAGAATCATGTGATGCATGGCAGGTGTAAACACATAGATGTAAGGTACCACTTTCTTAGAGATTTAACAAAGGAAGGTGTGGTAAAACTCATCTATTGCAGCACCCAAGATCAAGTGGCTGACATCATGACAAAGGCCTTGAAACTTGATTTGTTTTGTGATCTTAGAAATAGACTTGACATAACCGTCGCAGCTTTCAACGCGACGCAACCGAATTTCTTAACATCCAATTTCCAGGTAACCCTGTCGTCAAGAAACCCGAACGACCACATCGGTGTCTACTACGATCGTCTTGATACTTACGTTACTTACCGGAGTCAACAAATTACTTACCGGACTGCTATCCCGCCTTCTTATCAAGGACATAAAGAGATTGACGTTTGGTCGCCGTTTGTTTACGGTACTGATGTTCCTGTTGCACCTTTCAACTTTGTGAGCTTATCACAAGATCAATCTAACGGTAATTTTTATGTTAACGTTAAAATTGACGGTAGAGTTCGTTGGAAGGTTGGTGCGTTTATTTCGGGTCATTATCATTTACATGCTCGTTGTCCTGCTTATATCTCAATTGGTAATAATGGTAACGGCGTTAATTATGGAGAAAACGCCGTTAAGTATCAGTTGGATCAGCGTTGTTCTGTTAGCGTTTGA 3828 0.3827 MADTVTYHSTSIPKFDGFYDHWAELMESLLRSKDYWSLIETGIVLAPANPTPEQTQAATTSRLNNLKVKNYLFQAIDRSILERGTSKQIWESMRQKFQGSNKVKRAQLQSLRREFEVLWMKDDESVNDFFSITLVIANKMTTHGESLTQSQIVEKILRSMTAKFEYVVCSIEQSSDTTTMSIDELQSSLLVQEGRMNHHKAKQEEQALTITNLGRGNGNPRGRGRGSSSRGRGRGRTSNSKEYVECYKCHKLGHYQSECPNWEENADFAAEFNEHEEILLMTQQQSCINTSDQVWFLDSGCSNHMIGTKEWLFDFDDKFRETVKLGDNSTMQVMGKGNVKLYLAGKGHLSFKGLNALAKREMVKGLPMVKDIQTVCSDCVVSTQHIDSFPKDTSWRAATKLELIHLDICGPINPTSNGGNRYFIAFTDDLTKKTWTYPLKDKESAFECFKMFKALVEKESNCAVKCLRIDRGEEFTSSNFDEFCSEHGIKRQLTATYTPQQNGVSERKNRTLLNMVRSMLAGKNVPKRFWPEAVVWATYVINRSPTLSVNDMTPEEAWSSTKPLVSHFKVFGCIGYVHIPDTQRKKLDPKGIKCVLLGVSEESKAYKLYDPLQKKIIISKDVVFDESNGWNWDEKAKTQSPQVIEETISEHSGQGITVEDDQQREEHTPIDENEYEENYEDNGDVNTTIRQLPPRARKPPGWVQDYVTNIEDNDIEAMQNLVVFRDDSDPHNYEEASKMTVWRKAMDQEIESIERNNPWELVFLPKEAKRIGVKWIFKTKYNENGEVEKYKARLVAKGYSQQYGIDFNEVFAPVARWDSIRAILVVAASQGWYVYQFDVKSAFLHGELQENVYVDQPPGYFKKDGMVYKLRKALYGLKQAPRACPIVPGNKLTKDESGKLVDATSFRQMTGCLMYLLASEPDLTFSVCLIARYMERPTELHLAAAKRVLRYLKGSLDFGILYKRNCELRLEGWSDSDYAGDVDDRKSTSGYVFMLGSSPISWSSKKQPIVTLSTTEAEYVSVASCACQAIWLRRILDHLLQTQECTTIHCDNSSSIKLSKNHVMHGRCKHIDVRYHFLRDLTKEGVVKLIYCSTQDQVADIMTKALKLDLFCDLRNRLDITVAAFNATQPNFLTSNFQVTLSSRNPNDHIGVYYDRLDTYVTYRSQQITYRTAIPPSYQGHKEIDVWSPFVYGTDVPVAPFNFVSLSQDQSNGNFYVNVKIDGRVRWKVGAFISGHYHLHARCPAYISIGNNGNGVNYGENAVKYQLDQRCSVSV 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02118 1275 MobiDBLite consensus disorder prediction 650 680 - -
Tsu01g02118 1275 Gene3D - 394 570 IPR036397 GO:0003676
Tsu01g02118 1275 Pfam Integrase core domain 401 499 IPR001584 GO:0015074
Tsu01g02118 1275 ProSiteProfiles Integrase catalytic domain profile. 386 562 IPR001584 GO:0015074
Tsu01g02118 1275 Pfam gag-polypeptide of LTR copia-type 67 198 - -
Tsu01g02118 1275 MobiDBLite consensus disorder prediction 657 671 - -
Tsu01g02118 1275 MobiDBLite consensus disorder prediction 196 238 - -
Tsu01g02118 1275 CDD RNase_HI_RT_Ty1 971 1106 - -
Tsu01g02118 1275 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 756 883 IPR013103 -
Tsu01g02118 1275 PANTHER LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN 1118 1275 - -
Tsu01g02118 1275 SUPERFAMILY Retrovirus zinc finger-like domains 229 265 IPR036875 GO:0003676|GO:0008270
Tsu01g02118 1275 SUPERFAMILY DNA/RNA polymerases 755 1076 IPR043502 -
Tsu01g02118 1275 ProSiteProfiles Zinc finger CCHC-type profile. 246 261 IPR001878 GO:0003676|GO:0008270
Tsu01g02118 1275 SUPERFAMILY Ribonuclease H-like 396 556 IPR012337 -
Tsu01g02118 1275 SMART c2hcfinal6 245 261 IPR001878 GO:0003676|GO:0008270
Tsu01g02118 1275 PANTHER OS05G0367900 PROTEIN 1118 1275 IPR044839 GO:0098542
Tsu01g02118 1275 Pfam Late embryogenesis abundant protein 1140 1243 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02118 Tsu-Chr1 22081259 22087092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02118 695 882 Receptor kinase-like Gene Family AT4G23160 41.627 2.88e-43 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02118 - - boe:106292193 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04091 07 46739496 46740730 Tsu01g02118 01 22081259 22087092 PCT