Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01933 ATGCAGAGGCCACCACCCGAAGATTTTCTGTTGAAAGAGACCAAACCCCATCTTGGTGGGGGAAAAATCTCTGGTGACAAACTGACCAGCACCTATGACCTTGTTGAGCAGATGCAATACCTTTATGTGAGGGTTGTTAAGGCTAAGGATTTGCCTTCGAAGGATGTAACCGGCAGTTGCGATCCTTATGCCGAAGTTAAGCTCGGGAACTATAAAGGAACCACTCGGCATTTCGAGAAGAAAACCAATCCTGAATGGAATCAGGTTTTTGCTTTTTCGAAGGACAGACTTCAGGCCTCAATGTTGGAGGTTACTGTGAAAGATAAGGATGTTGTGAAGGATGACTTCATTGGTCGCGTGTGGTTTGATTTGAATGAGGTCCCGAAACGGGTTCCCCCGGATAGTCCGTTGGCGCCGCAATGGTATAGGTTGGAGGATAGAAAAGGTGATAAGGTTAAGGGAGAACTGATGCTGGCTGTTTGGATGGGTACACAGGCTGATGAAGCATTTCCTGAAGCTTGGCACTCAGATGCCGCGACTGTTAGTGGGGTCGATGCTCTTGCAAATATTAGGTCGAAAGTTTATTTGTCTCCTAAGCTTTGGTATTTGAGGGTCAATGTGATAGAGGCACAGGACTTGCAACCAACTGATAAGGGTAGATATCCGGAAGTTTTTGTGAAGGCTATTTTAGGGAATCAGGCATTGAGGACTAGAATCTCTCAGAGCAGGACTATCAATCCATTGTGGAACGAGGATCTGATGTTTGTTGCTGCAGAACCGTTCGAGGAGCCACTGATTTTGAGTGTGGAAGACAGAGTTGCTCCAAACAAGGAAGAAGTACTGGGGAGGTGTGCAATTCCTTTGCAGTTTATGGATCGGAGACTAGATCATAAACCGGTGAATACTAGGTGGTTTAATCTTGAGAAACATATTGTTGTAGAAGgggaaaagaagaaagaaatcaaattTGCAAGTAGGATTCATATGAGGGTCTGTCTAGAAGGTGGTTATCATGTTTTGGACGAATCAACTCACTACAGCAGCGATCTTCGACCAACGGCGAAACAACTTTGGAAATCTGGAATTGGTGTTCTTGAAGTGGGGATATTGAGTGCACAGGGTTTGATGCCGATGAAAAATAAAGATGGGAGGGGGACAACAGATGCTTATTGTGTAGCAAAATACGGACAAAAGTGGATCCGAACAAGGACAATCATTGATAGCTTTATGCCGAGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTCATAACAATTGGTGTATTTGATAATTGTCATTTGCATGGTCCTGAAAAGGCTGGAGGGGCGAAAGATTCAAGAATTGGTAAGGTAAGGATTCGTCTCTCGACACTCGAGACTGATCGGGTGTATACACATTCCTATCCACTTCTTGTTCTTCACCCTAGTGGTGTGAAGAAAATGGGTGAAATTCAACTGGCTGTGAGGTTCACTTGTTCTTCTTTGCTCAATATGATGCACATGTATTCACTACCACTGTTGCCAAAGATGCATTATATACATCCGTTGACTGTTAGCCAGCTCGACAGTTTGAGGCATCAAGCTACTCAGATAGTTTCAATGAGGCTGAGTCGTGCTGAGCCGCCGCTGAGAAAGGAGGTAGTTGAGTACATGCTTGACGTCGGTTCCCATATGTGGAGTATGAGAAGAAGCAAAGCTAATTTCTTCAGAATCATGGGAGTATTGAGTGGACTAATCGCTGTCGGAAAATGGTTTGATCAGATTTGCAATTGGAAAAATCCAATTACAACAGTTCTGATTCATATCTTGTTTATAATACTGGTCATGTATCCTGAACTTATCCTACCAACAGTTTTCCTTTACCTCTTCCTGATTGGAATTTGGCACTATAGATGGAGGCCAAGACACCCTCCTAACATGGACACTCGGCTCTCTCATGCTGATTCGGCTCATCCTGACGAACTTGACGAAGAATTCGACACATTCCCGACTTCGCGGCCTTCTGACATTGTTCGTATGAGATATGATCGGCTTAGAAGCATAGCTGGTCGGATACAGACTGTGGTTGGTGACTTGGCTACTCAAGGGGAAAGGCTGCAGTCTTTGCTGAGCTGGCGTGATCCGAGAGCCACAGCATTGTTCGTGATTTTCTGTCTGATTGCTGCTTCTGTACTTTATGTAACTCCATTCCAAGTCGTGGCCCTTCTGACCGGAATTTATGTGTTGAGACACCCGAGGTTTCGTCATAAGCTTCCATCGGTGCCGCTGAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA 2325 0.4447 MQRPPPEDFLLKETKPHLGGGKISGDKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYAEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRLQASMLEVTVKDKDVVKDDFIGRVWFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWMGTQADEAFPEAWHSDAATVSGVDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISQSRTINPLWNEDLMFVAAEPFEEPLILSVEDRVAPNKEEVLGRCAIPLQFMDRRLDHKPVNTRWFNLEKHIVVEGEKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSGIGVLEVGILSAQGLMPMKNKDGRGTTDAYCVAKYGQKWIRTRTIIDSFMPRWNEQYTWEVFDPCTVITIGVFDNCHLHGPEKAGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVKKMGEIQLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTVFLYLFLIGIWHYRWRPRHPPNMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAASVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01933 774 Gene3D C2 domain 361 498 IPR035892 -
Tsu01g01933 774 ProSiteProfiles C2 domain profile. 22 142 IPR000008 -
Tsu01g01933 774 CDD C2C_MCTP_PRT_plant 202 352 - -
Tsu01g01933 774 Gene3D C2 domain 24 162 IPR035892 -
Tsu01g01933 774 Gene3D C2 domain 187 331 IPR035892 -
Tsu01g01933 774 PANTHER PROTEIN QUIRKY-LIKE 1 774 - -
Tsu01g01933 774 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Tsu01g01933 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 363 504 IPR035892 -
Tsu01g01933 774 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 1 774 - -
Tsu01g01933 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 354 IPR035892 -
Tsu01g01933 774 ProSiteProfiles C2 domain profile. 346 472 IPR000008 -
Tsu01g01933 774 Pfam Plant phosphoribosyltransferase C-terminal 619 774 IPR013583 -
Tsu01g01933 774 Pfam C2 domain 201 307 IPR000008 -
Tsu01g01933 774 Pfam C2 domain 363 474 IPR000008 -
Tsu01g01933 774 Pfam C2 domain 40 142 IPR000008 -
Tsu01g01933 774 SMART C2_3c 202 300 IPR000008 -
Tsu01g01933 774 SMART C2_3c 40 136 IPR000008 -
Tsu01g01933 774 SMART C2_3c 364 471 IPR000008 -
Tsu01g01933 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 177 IPR035892 -
Tsu01g01933 774 CDD C2B_MCTP_PRT_plant 40 164 - -
Tsu01g01933 774 CDD C2D_MCTP_PRT_plant 364 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01933 Tsu-Chr1 19546990 19549630 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01933 1 774 Lipid Metabolism Gene Families AT3G57880 91.860 0.0 1496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01933 - - zju:107407989 1489.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01933 01 19546990 19549630 Tsu01g01933 01 19546990 19549630 ECH
Tsu07g03430 07 40700953 40703283 Tsu01g01933 01 19546990 19549630 PCT