Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01899 ATGCCAATTTCACCTGCAGCTGTGATTGTTCCATTGGGTATTCTCTTCTTCGCTTCTGGTCTCATCGTTAACCTCATTCAGGCAGCATGCTTTGTGATTGTGAGACCAATTTCAAAGAATTTGCACAGACGGATCAACAGGTTGCTTGCAGAACTTCTTTGGCTGGAGCTTGTTTGGATTTTTGATTGGTGGGCTGGAGTCAAGATCCAAGTATTCACAGATCGTGAAACCTTTCGTATCTTGGGTAAAGAGCATGCTCTTGTCATATCCAATCACAAAAGTGATATTGATTGGCTTGTTGGATGGATTTTAGCTCAGCGTTCAGGTTGCCTTGGTAGCACCCTTGCTGTGATGAAGAAATCATCAAAGTTTCTGCCGGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCTTGGAGAGAAATTGGGCCAAGGATGAAAGCACATTAAAGTCAGGCCTACAGCAACTGAGGGATTTCCCTCTTCCCTTTTGGTTGGCACTCTTTGTTGAAGGAACTCGCTTTACACAGGCCAAGCTATTAGCCGCTCAGGAATATGCAACCTCGACTGGATTGCCTGTTCCTAGAAACGTTTTGATTCCAAGAACTAAGGGGTTTGTTTCAGCAGTAAGTCATATGCGCTCATTTGTTCCGGCAGTTTATGATGTAACAGTGGCAATTCCCAATAGTTCACCCGCTCCTACAATGCTAAGACTCTTCAAGGGGCAACCTTCAGTGGTGCATATGCATATTAAACGGCATTTGATGAAGGATTTACCAGAAACAGATGAAGCTGTAGCTCAATGGTGTCGAGACGTATTTGTGGCTAAGGATGCTTTGTTAGACAAACATATAGCCGATGACAAATTCAGCGATCATGAGCCACGGGATCTCGGTCGACCAATAAAGTCTCTTCTGGTTGTCATAACATGGATTTTTGTCGTCGTTGCGGGGACTGTTAAGTTGCTTCAATGGTCTTCTCTACTATCCTCTTGGAAGGGTGTTGCATTTTCGTTATTTAGTTTGGCAATCGTCACTGCATTGATGCAAATATTGATTAGGTTCTCACAATCTGAGCGTTCAAACCCTGCCAAGGTTCCACCTTCAAAGCCCCAAAATAGAGAAGAATTGCAGGGTAGTGATGACAAACAAGAGTAG 1161 0.435 MPISPAAVIVPLGILFFASGLIVNLIQAACFVIVRPISKNLHRRINRLLAELLWLELVWIFDWWAGVKIQVFTDRETFRILGKEHALVISNHKSDIDWLVGWILAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQQLRDFPLPFWLALFVEGTRFTQAKLLAAQEYATSTGLPVPRNVLIPRTKGFVSAVSHMRSFVPAVYDVTVAIPNSSPAPTMLRLFKGQPSVVHMHIKRHLMKDLPETDEAVAQWCRDVFVAKDALLDKHIADDKFSDHEPRDLGRPIKSLLVVITWIFVVVAGTVKLLQWSSLLSSWKGVAFSLFSLAIVTALMQILIRFSQSERSNPAKVPPSKPQNREELQGSDDKQE 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01899 386 CDD LPLAT_LCLAT1-like 58 253 - -
Tsu01g01899 386 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 7 376 - -
Tsu01g01899 386 SMART plsc_2 86 208 IPR002123 GO:0016746
Tsu01g01899 386 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-LIKE PROTEIN 7 376 - -
Tsu01g01899 386 Pfam Acyltransferase C-terminus 239 312 IPR032098 -
Tsu01g01899 386 Pfam Acyltransferase 80 228 IPR002123 GO:0016746
Tsu01g01899 386 MobiDBLite consensus disorder prediction 360 386 - -
Tsu01g01899 386 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 57 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01899 Tsu-Chr1 19088118 19095232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01899 6 385 Miscellaneous Gene Families AT3G57650 73.947 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01899 K13523 - gmx:100812696 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01899 01 19088118 19095232 Tsu01g01899 01 19088118 19095232 ECH
Tsu07g03394 07 40344479 40350068 Tsu01g01899 01 19088118 19095232 PCT