Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01309 CTGTTTGACTTTGCAAACAATTATCAAGGCATATACCATAATAGTATCGGACCAGCAGCAAAAGTATATTCCAGTAGTGGATATAAGGATGAATTAGTATGGGCAGCAGCATGGCTTCATCGTGCCTCtagtttaaaaaaatacctTGATTATCTTGGAGGTGTAGGTGACACTGGGGGTGCAAGAACAATGTTTAGTTGGGATGACAAGTATGTTGGTGCACAAATTCTTGTTGCAAAGCTTATTTTAGAAGGGGGTGTGGAGTCTTCAGGTATTTGGGGTCAATATAAAGCAAATGCAGAACAATTCATATGTTCATGTGCTCAAAAATCGAAccaaaactttcaaaaaacACCAGGTGGTTTGTTATGGTTTCAACCATGGGGTAATAATCAATATGTTTCAACCGCTACATTTGTAATGTCCACTTATTCTCAATATTTGTCTGCAAAACAAGTATCTCTTCAATGTAGTGGTGGTGATGTTAGTCCTTCTGATCTCACATCTCTTGTTCAAGCTCAGGTGGACTACATATTGGGCTCAAATCCAAAAAAGATGAGTTACATGATTGGATATGGATCAAACTATCCACAAAAAGTTCATCATAGAGCAGCATCAattgaatcaatcaaaatagACAAATCACGAGTAACATGCAAAGAAGGCTTTGACAAGTGGTTCAATAGAAATGCACCAAATCCTAACATATTGGAAGGAGCAGTTGTAAGTCCAGATCAAAATGATGGTTTTACGGATAATAGGAATGATTTTCAATTGGCTGAACCAACTACTGTTTCTGTTGCACCCTTAGTTGGTGTTCTTGCTTATCTAGCTTAA 837 0.3596 LFDFANNYQGIYHNSIGPAAKVYSSSGYKDELVWAAAWLHRASSLKKYLDYLGGVGDTGGARTMFSWDDKYVGAQILVAKLILEGGVESSGIWGQYKANAEQFICSCAQKSNQNFQKTPGGLLWFQPWGNNQYVSTATFVMSTYSQYLSAKQVSLQCSGGDVSPSDLTSLVQAQVDYILGSNPKKMSYMIGYGSNYPQKVHHRAASIESIKIDKSRVTCKEGFDKWFNRNAPNPNILEGAVVSPDQNDGFTDNRNDFQLAEPTTVSVAPLVGVLAYLA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01309 278 Gene3D - 1 278 IPR012341 GO:0005975
Tsu01g01309 278 SUPERFAMILY Six-hairpin glycosidases 1 277 IPR008928 GO:0005975
Tsu01g01309 278 PANTHER ENDO-1,4-BETA-GLUCANASE 1 278 - -
Tsu01g01309 278 Pfam Glycosyl hydrolase family 9 1 274 IPR001701 GO:0004553|GO:0005975
Tsu01g01309 278 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 177 203 IPR018221 -
Tsu01g01309 278 PANTHER ENDOGLUCANASE 15 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01309 Tsu-Chr1 12328074 12339605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01309 1 277 Glycoside Hydrolase AT2G44550 61.511 3.08e-121 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01309 K01179 - gmx:100788655 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01309 01 12328074 12339605 Tsu01g01309 01 12328074 12339605 ECH