Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01253 ATGGAGGTTGTTTTAGCATCTTCCTCTATTGATGATGGGATAGGTTGTTGGGACATTCATACAGGTGCTGAACAGCCACGCTATAAATCATGTTCTTCCCCTTTTCATGGCCTTGTTTCTCTCGGTCCTCACTTCCTTGCTTCTTCTCAGCTTCAACACTCATCTTCTACCTCTGGTTCTGTTTTCTTCTGGTCCTCCTCCAAGCCTCAAGTTGAAGTTAAGAGCTTTCCTGTTGAACCTATTAAGCCACTTGCTGGTAATCACCAAGGGACCTATCTAGCTGGTGGAGCTTTGTCAGGTGATATCTACTTGTGGGAGGTTGAGACCGGCAGATTGCTTAAGAAGTGGCATGCTCATTTAAGGGCCATCACTTGCCTGGTATTTTCTGAAGATGACTCATTGCTGATATCTGGTTCTGAAGATGGATATGTAAGAGTTTGGTCTCTTTTCAGATTATTCGATGATTTGAGTAACCGGGAAGCAAAAAATCTTTACGAGTATAGTTTTTCAGAGCACACCATGCGTGTATCTGATGTTGTGATTGGTTATGGAGGATCCAGTGCAATTATAGTTTCAGCATCAGACGATCGTACGTGTAAGgTATGGAGCTTATCTAGTGGAACACTACTTCGAAGCATAGTTTTTCCTTCAATAATTAATGCCATTGCATTGGATCCTGCTGAACACGTGTTTTATGCTGGGAGCAGCgatggaaatatatatatagctgCACTTAACACCGAAAGAATCACTACTACTAACAACTATGGGAAGCATATCATCGGTTCATTCTCTAACCACAGTAAGGCAGTTACTTGCTTAACATATGGCAAAGTTGGAGATTTGTTGATTTCTGGGTCCGAGGATGGAATAGTTCGTGTTTGGAATGCTAAAACTCGCAACATTGTCCGCATGTTTAAACACGCTAAAGGACCTATAACTAATGTTCTTGTTGTTAGACAAGAAGTTGACCCAAGTAATCATATATCTTCTATTTCTAATTTACAAGCATCTACAAAAAAGAAGCCTTTAGAAAAATATGCAAATTCAACAGATGAAGATTCAGATGTGAACACTGTCATCAGCCTAGGGAGTAGCAGGGAATGCATGGATGTTTCATACCACAGTTCTAATATGATATCTATTCACACTAAAGAACTTCAGCAACAAGGTTCAGCCACTGCTTCTGAAATCGAAATAGAAAAACTAAAACATGAGTACGAAAGGACAATGAAGATGGCTAACCAATGGAAGAAAATGTatgaaaacttgcatcaatTTGGCATAAAGGAACTATTGGATGGTGATCAAATAAGAACCTCATGA 1326 0.3891 MEVVLASSSIDDGIGCWDIHTGAEQPRYKSCSSPFHGLVSLGPHFLASSQLQHSSSTSGSVFFWSSSKPQVEVKSFPVEPIKPLAGNHQGTYLAGGALSGDIYLWEVETGRLLKKWHAHLRAITCLVFSEDDSLLISGSEDGYVRVWSLFRLFDDLSNREAKNLYEYSFSEHTMRVSDVVIGYGGSSAIIVSASDDRTCKVWSLSSGTLLRSIVFPSIINAIALDPAEHVFYAGSSDGNIYIAALNTERITTTNNYGKHIIGSFSNHSKAVTCLTYGKVGDLLISGSEDGIVRVWNAKTRNIVRMFKHAKGPITNVLVVRQEVDPSNHISSISNLQASTKKKPLEKYANSTDEDSDVNTVISLGSSRECMDVSYHSSNMISIHTKELQQQGSATASEIEIEKLKHEYERTMKMANQWKKMYENLHQFGIKELLDGDQIRTS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01253 441 SUPERFAMILY WD40 repeat-like 4 318 IPR036322 GO:0005515
Tsu01g01253 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Tsu01g01253 441 SMART WD40_4 162 203 IPR001680 GO:0005515
Tsu01g01253 441 SMART WD40_4 69 106 IPR001680 GO:0005515
Tsu01g01253 441 SMART WD40_4 257 296 IPR001680 GO:0005515
Tsu01g01253 441 SMART WD40_4 206 244 IPR001680 GO:0005515
Tsu01g01253 441 SMART WD40_4 109 148 IPR001680 GO:0005515
Tsu01g01253 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Tsu01g01253 441 PANTHER WD-REPEAT PROTEIN 18 1 431 IPR045227 -
Tsu01g01253 441 PANTHER WD REPEAT-CONTAINING PROTEIN 18 1 431 - -
Tsu01g01253 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Tsu01g01253 441 Coils Coil 400 420 - -
Tsu01g01253 441 Pfam Neurobeachin beta propeller domain 104 322 IPR046851 -
Tsu01g01253 441 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Tsu01g01253 441 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Tsu01g01253 441 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Tsu01g01253 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Tsu01g01253 441 Gene3D - 216 390 IPR015943 GO:0005515
Tsu01g01253 441 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Tsu01g01253 441 Gene3D - 1 215 IPR015943 GO:0005515
Tsu01g01253 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01253 Tsu-Chr1 11598430 11603596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01253 113 316 Miscellaneous Gene Families AT5G08390 23.786 5.99e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01253 K14829 - gmx:100791195 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01253 01 11598430 11603596 Tsu01g01253 01 11598430 11603596 ECH