LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01242	ATGGATTCTGATTATGGTATTCCAAGAGAACTTTCAGATCTTCAAAAGCTTAGATCTTTATACCAACCTGAACTACCACCTTGTTTACAAGGTACAACTGTTAGGGTTGAATTTGGTGATGCAACAACAACTGCTGATCCTTCTGATGAACCTTCTATAAGTAGATCTTTCCCTAATACTTATGGACACCCTTTGGCTCACTTTCTTAGGGCTACTGCTAAAGTACCTGATGCTCAGATCATAACTGAACACCCTCCTATTAgGGTTGGAATTGTTTTCTGTGGAAGACAATCTCCCGGCGGACACAATGTTATTTGGGGTCTTCATGCTGCTCTCAAGATTCACAATCCTAACAGTGTTTTGCTTGGATTTCTTGGTGGATCAGATGGTCTATTTGCTCAGAAAACGTTGGAGATAACTGACGATATTCTCTCCACATACAAAAATCAAGGTGGTTATGATTTGCTCGGACGGACAAAAGATCAAATTAGGACCACAGAACAAGTTAATGCCGCACTTGCTGCATGCACCAATTTGAAACTTGATGGTCTTGTCATCATTGGAGGTGTGACATCAAACACAGATGCTGCACAACTTGCAGAAACATTTGCTGTTAAAAAATGCCCCACAAAGGTGGTTGGTGTTCCTGTGACTTTGAATGGAGATCTTAAAAACCAGTTTGTGGAAACAAATGTTGGTTTTGATACAATTTGTAAGGTGAATTCTCAGCTCATCAGCAATGTCTGCATTGATGCTCTCTCAGCAGAGAAGTATTACTATTTCATTCGTCTTATGGGACGCAAGGCATCACACGTTGCTTTGGAATGTACTCTTCAGTCCCATCCAAACATGGTAATTCTTGGTGAGGAGGTTGCTCAATCGAAGCTTACCCTTTTTGAAATTTCACGAAAGATTTCTGATGCAGTTCAGGCTAGAGCAGAACAAGACAAATATCACGGAGTAATTCTCATTCCAGAAGGTCTGATTGAGAGCATTCCTGAAGTGTATGCACTTTTGAAGGAAATTCATGGTTTACTCCGACAAGGTGTTGAAGCTGAAAAGATATCTCATCAGCTTTCACCATGGGCTTCTGCTTTATTCGAATTTCTACCACCATTTATTAGGAGACAGCTGCTCCTTTATCCCGAGTCAGATGACTCAGCACAGTTGTCTCAGATTGAGACTGAGAAACTTCTAGCATACCTTGTGGAAGCAGAGATAAACAAGCGTCAGAAAGAAGGAACTTACAAGGGAAAGAAATTCAATGCGATATGCCACTTTTTTGGATATCAAGCTCGAGGATCCCTTCCATCAAAATTTGACTGTGACTATGCATATGTTCTTGGACACATCTGCTACCATATACTTGCTGCTGGTTTGAATGGATACATGGCAACTTTAACTAACTTGAAGAATCCTGTAAACAAGTGGAAATGCGGTGCTGCTCCAATTTCAGCTATGATGACGGTGAAGCGCTGGTCTCCAAATCCTGGAGCCACATCAATCGGAAAACCTGCTATCCATCCAGCTACTGTTGATTTGAGAGGCAAAGCTTATGAGCTATTGCGTAGAAATGCGACAAGCTTTCTCATGGACGACATTTATAGAAATCCAGGTCCACTTCAGTTTGATGGTCCTGGTGCAGATGCCAAACCGATAACTCTTAATGTTGAAGACCAGGACTACATGGGTCGCATTAAGAAACTTCAGGAGTACCTTGAACAGGTACGAACCATTGTAAAGCCAGGGTGTCCTCAAGAGGTTCTGAAAGCAGCTTTGAGCGTGATGGGATCCGTTACCGAAGTTTTAACCGCCATGTCATCATCTGCCGGCAACGTATCATCTCTTTAA	1851	0.4187	MDSDYGIPRELSDLQKLRSLYQPELPPCLQGTTVRVEFGDATTTADPSDEPSISRSFPNTYGHPLAHFLRATAKVPDAQIITEHPPIRVGIVFCGRQSPGGHNVIWGLHAALKIHNPNSVLLGFLGGSDGLFAQKTLEITDDILSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACTNLKLDGLVIIGGVTSNTDAAQLAETFAVKKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCIDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAQSKLTLFEISRKISDAVQARAEQDKYHGVILIPEGLIESIPEVYALLKEIHGLLRQGVEAEKISHQLSPWASALFEFLPPFIRRQLLLYPESDDSAQLSQIETEKLLAYLVEAEINKRQKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATLTNLKNPVNKWKCGAAPISAMMTVKRWSPNPGATSIGKPAIHPATVDLRGKAYELLRRNATSFLMDDIYRNPGPLQFDGPGADAKPITLNVEDQDYMGRIKKLQEYLEQVRTIVKPGCPQEVLKAALSVMGSVTEVLTAMSSSAGNVSSL	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01242	616	PIRSF	PPi_PFK_PfpB	4	570	IPR011183	GO:0005524\|GO:0006096\|GO:0047334
	Tsu01g01242	616	TIGRFAM	PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase	14	558	IPR011183	GO:0005524\|GO:0006096\|GO:0047334
	Tsu01g01242	616	Hamap	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp].	10	561	IPR011183	GO:0005524\|GO:0006096\|GO:0047334
	Tsu01g01242	616	Pfam	Phosphofructokinase	88	453	IPR000023	GO:0003872\|GO:0006096
	Tsu01g01242	616	SUPERFAMILY	Phosphofructokinase	12	557	IPR035966	GO:0003872\|GO:0006096
	Tsu01g01242	616	Gene3D	Phosphofructokinase; domain 3	332	396	-	-
	Tsu01g01242	616	PANTHER	PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA	1	610	-	-
	Tsu01g01242	616	Gene3D	Phosphofructokinase domain	234	547	IPR035966	GO:0003872\|GO:0006096
	Tsu01g01242	616	PANTHER	PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE	1	610	-	-
	Tsu01g01242	616	Gene3D	-	18	512	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01242	Tsu-Chr1	11488230	11493257	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01242	K00895		-	gmx:100819847	1149.04

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu01g01242	01	11488230	11493257	Tsu01g01242	01	11488230	11493257	ECH