LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01188	ATGGCAATGCCAATGGGAAATGCAGTAACACCGGAGATTAAGCATTTTCCGGCAGTTGTTACCGGCGGTGAGATACAGTAcagaccacaacaacaacatcaacaacaacaacaacaacaaccacaacaatGGTTTGTTGATGAGAGAGATGGGTTTATGAATTGGCTTCGTAGCGAATTCGCTGCTGCGAATGCGATTATTGATTGTCTTGTTCAGCATTTACGTGTTGTTGGTGAAGGTGGTGAGTATGATTTTGTTGTTGGTGCAATTGAGCAGAGGAGAGTTAATTGGAATCAGGTGCTTCTTATGCAGCAATATTTTTCGGTTTCTGAGGTGGCGTATGCGTTACAGCAAGTCGCGTGGAGGAGGCAGCAGAAATTTGCGAAACCGGTTGTTAAGGAGTTTAGGAAGGTTAGACAATGGCAGAGGTTTGAAGGTGGTGGTAATAATGTTAAGGAAGGTAGTAATTCTAGTGTAGAATCTCGTCGTGGTGAAGTGAATTATGCGGTTAAAGGGTCTCAAGTAGTTGATAAGAGTGAAGAATATAAATCTGGTGGCAAAGTTGGAAGTAAGGATGATAAGAGTTCAGACAATGTTGAGGTGAAGAAAGATACtataacaaatcatcaatcTGCTGGCCTTTTGAAGACTGCTGTGAATTCTCAAGGATCTCTGTCCAGTGCAGAATGTAAAGCTGTGGGTGTAAATGCGGAATGTGCATCAAAGTCTGGAGGTTTTATTCTTGTAGAATATGATTCAAAAAATGATTCACTTTCTATGCAAAATCAACATCAGAACGAGAATGGTTCTACCACAGGAAAAACTTTTATTAGCAATGAGATGGTTGATGGGAAGATGGTTAATGTGGTTGAAGGACTTAAGTTGTATGAGAATTTACTGGATAGTACTGAAGTTTCAAAACTTGTTTCGTTGGTCAATGATTTGAGGGTTGCTGGAAGAAAAGGACAATTGCAAGGAAACCAGACGTATGTGGTTAATAAACGCCCCGTGAGAGGTCATGGAAGGGAGATGATTCAGTTGGGTGTTCCCGTTGATGCACCACCAGATGTGGACAATATGACAGCATCGTTCAAAGATAAGAATTTCGAATCTATTCCTTCCTTGTTTCAAGATATCGTTGAGCGCATGGCTGCCTCAAAAGTGATGACTGTGAAGCCTGATGCGTGCATTGTGGATTTCTATAACGAGGGTGATCACTCAACGCCAAACAGTTGGCCGTCTTGGTTTGGAAGGCCTATTTATACGCTTTCCCTGACTGAATGTGACATGACTTTCGGTAGAACAATTGTCTCAGAACACCATGGGGATTTTAGGGGCAATGTCAAGCTTTCCCTTGTACCTGGGTCCCTTCTAGTCATACAAGGGAAGTCGGCTGATTTTGCTAAACATGCTATTCCTTCTATTCACAAACAACGCATACTTGTTACTTTTACGAAgtctttaccaaaaaaatccCTGCCAATTGATGCTCAAGGTCTTGCATCACCGGCAACATCACATTGGTCAGCTTCAGCCACACCGAGCAGATCTCCAAATCATGTCAATCACCGTCCGATAACTCCCAAGCATTATTCTGCAGTTCAAGTAACTGGGGTACTGCCTGCTCCATCCCTACATGTTCCTCCTAATAGCATGCAGCCATTATTTGTGCCGGTGCCAGTTGCACCTCCCATGCAATTTGCTACACCTGTGCCGATCCCTACCGGTTCTACAGCATGGACTGCGGGTCCTCCAAGACATCCTCCTCCTCGAGTCGTCGTTCCCGGCACAGGAGTCTTCCTCCCTCCATCTGGCTCAGCTAATTCATCTCAGCACTTGCAAGGTACCTTACTTGAAGTGAACGTCGGTGTTGGTGGAACCCAAAACTCGTCGATAAAGGAAAACGGGAAAACTAATCATAAAAATACTAATGGTTCACCAAAAGGCAAAAAGGATGGAAATACGCAAAGACAAGAATGCAATGGAAACACAGATGGAACTGAAGCTGAACAAGCTATAGTGGAAGAAGGGGAAAGCAATGGAGAAACTGTTGCAATCCAATGA	2064	0.4196	MAMPMGNAVTPEIKHFPAVVTGGEIQYRPQQQHQQQQQQQPQQWFVDERDGFMNWLRSEFAAANAIIDCLVQHLRVVGEGGEYDFVVGAIEQRRVNWNQVLLMQQYFSVSEVAYALQQVAWRRQQKFAKPVVKEFRKVRQWQRFEGGGNNVKEGSNSSVESRRGEVNYAVKGSQVVDKSEEYKSGGKVGSKDDKSSDNVEVKKDTITNHQSAGLLKTAVNSQGSLSSAECKAVGVNAECASKSGGFILVEYDSKNDSLSMQNQHQNENGSTTGKTFISNEMVDGKMVNVVEGLKLYENLLDSTEVSKLVSLVNDLRVAGRKGQLQGNQTYVVNKRPVRGHGREMIQLGVPVDAPPDVDNMTASFKDKNFESIPSLFQDIVERMAASKVMTVKPDACIVDFYNEGDHSTPNSWPSWFGRPIYTLSLTECDMTFGRTIVSEHHGDFRGNVKLSLVPGSLLVIQGKSADFAKHAIPSIHKQRILVTFTKSLPKKSLPIDAQGLASPATSHWSASATPSRSPNHVNHRPITPKHYSAVQVTGVLPAPSLHVPPNSMQPLFVPVPVAPPMQFATPVPIPTGSTAWTAGPPRHPPPRVVVPGTGVFLPPSGSANSSQHLQGTLLEVNVGVGGTQNSSIKENGKTNHKNTNGSPKGKKDGNTQRQECNGNTDGTEAEQAIVEEGESNGETVAIQ	687

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01188	687	MobiDBLite	consensus disorder prediction	626	687	-	-
	Tsu01g01188	687	MobiDBLite	consensus disorder prediction	505	525	-	-
	Tsu01g01188	687	Gene3D	-	276	492	IPR037151	-
	Tsu01g01188	687	PANTHER	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED	1	672	IPR044842	GO:0003729\|GO:0006402\|GO:0032451
	Tsu01g01188	687	MobiDBLite	consensus disorder prediction	178	199	-	-
	Tsu01g01188	687	MobiDBLite	consensus disorder prediction	505	522	-	-
	Tsu01g01188	687	MobiDBLite	consensus disorder prediction	626	668	-	-
	Tsu01g01188	687	Pfam	2OG-Fe(II) oxygenase superfamily	293	478	IPR027450	-
	Tsu01g01188	687	PANTHER	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	1	672	-	-
	Tsu01g01188	687	SUPERFAMILY	Clavaminate synthase-like	283	484	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01188	Tsu-Chr1	10983872	10991019	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01188	-		-	mtr:MTR_1g033500	1019.22