Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01140 ATGGATCCACCAACATATCAAATTTCACTCACCCGTATGAGAAAGTCTGTTGAAAAGCTTGGTTCTTCTACACAGGGTTATGGGGAGCCAACATTAATGAGGTTTTTGATTGCACGGTCAATGGAATCAGATAAAGCAGCAAAGATGTTTGTCCAATGGCAGAAATGGAGGGAAACTATGGTTCCTAATGGATTCATTTCAGATTCTGAAGTTCCTGATGAATTAGAAACTAGAAAGATCTTTTTGCAGGGTTTGTCTCAAGATAAATATCCTGTGATGATTGTTCAAGCAAGTAGACACTTCCCTTCCAAGGATCAAGATCAATTCAAGAAATTTATTGTACATTTACTCGACAAGACAATCGCGAGtGCTTTCAAGGGAAGGGAGGTAGGAAATGAAAAGTTGATTGGAGTTCTTGATCTGCAGAATATATCGTACAAGAATGTCGATGCACGTGGTTTAATTACTGGATTTCAATTTTTGCAGGCTTACTACCCCGAACGTTTAGCAAagtgttatattttacatatgcCCTGGTTTTTTGTGAGTGTTTGGAGACTAGTTTCTACTTTCCTTGACAAGGCAACACAAGATAAGATTGTAATTATAAGCAACGAGGATGAGAAAAAAGAGTTCGTAAATGATGTTGGTGAGGATATTCTTCCAGAAGAAATTTTAACTAAAGGACACAAGGGGTTGTTTCCTCCTTCCCTCCCCAAAGATCCTTGTGCTCGGCTTGTTGCTGGGTTTTTACTTGCAAACAGGCTTGCCGATCAGTTTCATAACGATTTTAACTTGCATTGCACACGCCAAGCATCTAGATACTGGAAGAAGAATATCAACTAG 846 0.383 MDPPTYQISLTRMRKSVEKLGSSTQGYGEPTLMRFLIARSMESDKAAKMFVQWQKWRETMVPNGFISDSEVPDELETRKIFLQGLSQDKYPVMIVQASRHFPSKDQDQFKKFIVHLLDKTIASAFKGREVGNEKLIGVLDLQNISYKNVDARGLITGFQFLQAYYPERLAKCYILHMPWFFVSVWRLVSTFLDKATQDKIVIISNEDEKKEFVNDVGEDILPEEILTKGHKGLFPPSLPKDPCARLVAGFLLANRLADQFHNDFNLHCTRQASRYWKKNIN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01140 281 PANTHER SEC14 CYTOSOLIC FACTOR-LIKE 7 228 - -
Tsu01g01140 281 CDD SEC14 81 224 IPR001251 -
Tsu01g01140 281 Pfam CRAL/TRIO domain 76 224 IPR001251 -
Tsu01g01140 281 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 68 225 IPR001251 -
Tsu01g01140 281 SMART sec14_4 74 230 IPR001251 -
Tsu01g01140 281 Gene3D - 4 231 IPR036865 -
Tsu01g01140 281 PANTHER OS03G0850700 PROTEIN 7 228 - -
Tsu01g01140 281 SUPERFAMILY CRAL/TRIO domain 68 224 IPR036865 -
Tsu01g01140 281 SUPERFAMILY CRAL/TRIO N-terminal domain 7 66 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01140 Tsu-Chr1 10537358 10541549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01140 25 203 Acyl Lipid Metabolism Gene Families AT1G55840 23.980 1.55e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01140 - - gmx:100811048 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01140 01 10537358 10541549 Tsu01g01140 01 10537358 10541549 ECH