Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01126 ATGGGTTTCCGATCCCTCTTCAACCGAAAGAAGAAACTTCTTAAGAAATCGACATCCTCTTCTCCGACAACCGTAACCGAAAATACAACCTTTATCTCCCGTACCCCGTCCCTCTCGTTCCAATCACGTGTCCATTTTGCCGAGGATTTGGAACACGTGTTTCAGAAATTTGATGTTAACGGTGATGGCCAAATCTCTTCTTCTGAATTAGGGTCCATCATGAAAAGCCTAGGACAACCCGCAACAGAAGAAGAACTCGATAAAATGATCCGTGAGGTTGATGCTGACGGCGATGGTCACATTAACCTTGAGGAGTTTATCGAGTTAAATACCAAAGACATAGATCAAAATGAGATTTTGGAAAATCTCAAAGAtgcattttctgtttttgaCCTTGATAAAAATGGTTCGATATCAGCCGAGGAATTGCACAATGTTATGATCAGCCTCGGCGATCAATGTTCTCTTGCCGAGTGTCAAAAGATGATAGGCGGCGTTGATAGTGATGGTGATGGAATGATCGATTTTGAAGAGTTTAAGAAGATGATGTTGGGCTCCACCTTTGTGTCCATGGAAAGAACAAATAACGGTGGAATAGAAATCTAA 606 0.4092 MGFRSLFNRKKKLLKKSTSSSPTTVTENTTFISRTPSLSFQSRVHFAEDLEHVFQKFDVNGDGQISSSELGSIMKSLGQPATEEELDKMIREVDADGDGHINLEEFIELNTKDIDQNEILENLKDAFSVFDLDKNGSISAEELHNVMISLGDQCSLAECQKMIGGVDSDGDGMIDFEEFKKMMLGSTFVSMERTNNGGIEI 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01126 201 SMART efh_1 49 77 IPR002048 GO:0005509
Tsu01g01126 201 SMART efh_1 85 113 IPR002048 GO:0005509
Tsu01g01126 201 SMART efh_1 122 150 IPR002048 GO:0005509
Tsu01g01126 201 SMART efh_1 158 186 IPR002048 GO:0005509
Tsu01g01126 201 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Tsu01g01126 201 Pfam EF-hand domain pair 121 183 IPR002048 GO:0005509
Tsu01g01126 201 Pfam EF-hand domain pair 48 108 IPR002048 GO:0005509
Tsu01g01126 201 CDD EFh 49 109 IPR002048 GO:0005509
Tsu01g01126 201 PANTHER CALCIUM BINDING PROTEIN 19 192 - -
Tsu01g01126 201 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Tsu01g01126 201 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Tsu01g01126 201 Gene3D - 114 196 - -
Tsu01g01126 201 Gene3D - 7 113 - -
Tsu01g01126 201 ProSitePatterns EF-hand calcium-binding domain. 94 106 IPR018247 -
Tsu01g01126 201 CDD EFh 123 183 IPR002048 GO:0005509
Tsu01g01126 201 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 19 192 - -
Tsu01g01126 201 SUPERFAMILY EF-hand 48 186 IPR011992 -
Tsu01g01126 201 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Tsu01g01126 201 ProSitePatterns EF-hand calcium-binding domain. 167 179 IPR018247 -
Tsu01g01126 201 ProSiteProfiles EF-hand calcium-binding domain profile. 154 189 IPR002048 GO:0005509
Tsu01g01126 201 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01126 Tsu-Chr1 10368288 10368928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01126 6 183 EF-hand Containing Proteins AT1G24620 59.551 1.99e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01126 K13448 - oeu:111396559 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01126 01 10368288 10368928 Tsu01g01126 01 10368288 10368928 ECH