Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01041 atGAATCCATACATCATCGGCGTCATACTCCCATTTCTCGCCACACTCCTCTTCCGTCCAAACCATCCCAAACGCCGCGGACTTCCGGTCACCGACACAATCGGCGATCCAGGAGTCACCATTCGTAACAGACGATTCGATTCACCAGTAGAAACAGCATGGGAAGGAGTAAGCACTTTAGCAGAGCTATTCGAAGAAGCTTGCAAGAAACACGGTGAGAGATTATTGCTCGGAACACGTTCGATTATATTGAAAGAAACGGAAACGAGTAGCGATGGTAGAAGATTCGAGAAAGTTGAATTTGGAGATTATGAGTGGATTTCGTATGCAAATGCGTTTGAAGATGTTTTGAGATTTGGTAGTGGATTGGCTGCATTGGGACATGAAAGGAATGAACGTGCTGCTATCTTTGCTGATACTAGAGCAGAGTGGTTCCTTGCTCTGCAGGGTTGTTTCAGGCGAAATGTGACAGTTGTAACTATGTATGCATCGTTGGGAGAGGAAGCTTTATGTCACTCACTAAATGAGACAGAGGTTACAACAGTAATTTGTGGGAAGAAAGAATTGCAAACACTTGTAAATATTAGTGGACAACTTGACTCAGTGAAACGTGTGATATGCATGGATGATGATATCCCATCTGATGCCTCGTCTGTTGGACATGGCTGGACAATTATATCCTTTGCTGATGTTAAGAGACTTGGTAAAGAAAATCCTGTTGATGCTGATTTACCTCTCCCAGCAGATGTTGCAGTTATAATGTATACAAGTGGAAGTACCGGATTACCTAAGGGTGTGATGATGACACATGGTAATGTTTTAGCTACACTCTCTGCTGTGATGACAATTGTTCCCAAACTTGGGGAAAAGGATGTATATCTAGCATACTTGCCACTGGCTCATATCCTTGAACTAGCAGCTGAGaatttgatgGCAGCTGTTGGGATTGCTATAGGATATGGATCTCCTCTGACTCTAACAGATACATCAAGCAAGATAAAGAAGGGAACAAAGGGGGATGCTACTGTGTTGATGCCAACTTTATTGACTGCTGTACCTGCAATTCTTGACCGTGTTCGTGATGGAGTGTTTAAGAAGGTAAATGCAGCAGGAGGATTATCGAAGAAGTTATTTTATTTAGCCTATGAGAGGAGGTTGCAAGCAATTAATGGGAGCTGGTTTGGAGCTTGGGGCTTGGAAAAGGCCCTCTGGAATTTTCTTGTGTTTAGAAAAGTCCGAGCAATTCTAGGCGGTCGTATCCGTTTTATATTGTCTGGTGGTGCTCCCCTTTCTGGTGATACTCAGCAATTCATCAACATTTGTCTTGGTGTTCCAATAGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATTTTGATGATACATCTGTTGGCCGTGTTGGACCACCTCTTCCTTGCTCATTTGTTAAGttaatCGACTGGTCTGAAGGTGGGTATTTAACTAATGACTCACCAATGCCTCGTGGTGAAATTGTAATCGGTGGTCCAAATGTTACTCTTGGGTACTTCAAGAATGAAGAAAAGACAAAAGAATCATACAAGGTTGATGAAAAAGGAATGAGATGGTTCTACACTGGTGACATAGGGAGGTTTCATACAGATGGTTGCCTTGAGATCATTGATCGTAAAAAGGACATTGTTAAACTGCAGCATGGAGAGTATGTCTCACTGGGAAAGGTTGAGGCAGCTCTTATTGTCAGCCCCTACGTGGACAATGTAATGTTGCATGCTGATCCTTTCCATAGTTACTGTGTGGCACTTGTTGTGACTTCTCAGTCCACATTGGAAGAATGGGCTTCAAAGCAAGAAATTCCTTATTCTAGTTATTCAGAACTCTGCTCTAAAGAAGAAAGTGTGAAAGAGGTGCATGCGTCACTAGTAAAGGAAGCAAAGAAAGCTCGTTTGGAGAAATTTGAGATTccagcaaaaataaaattgctttCTGATCCCTGGACACCTGAGTCTGGCCTAGTCACTGCTGCTCTCAAGATCAAGAGAGAGGTCATCAAAAAAACTTTCCAGGAAGAACTTGTGAAGTTATACTCTTCATAG 2088 0.4219 MNPYIIGVILPFLATLLFRPNHPKRRGLPVTDTIGDPGVTIRNRRFDSPVETAWEGVSTLAELFEEACKKHGERLLLGTRSIILKETETSSDGRRFEKVEFGDYEWISYANAFEDVLRFGSGLAALGHERNERAAIFADTRAEWFLALQGCFRRNVTVVTMYASLGEEALCHSLNETEVTTVICGKKELQTLVNISGQLDSVKRVICMDDDIPSDASSVGHGWTIISFADVKRLGKENPVDADLPLPADVAVIMYTSGSTGLPKGVMMTHGNVLATLSAVMTIVPKLGEKDVYLAYLPLAHILELAAENLMAAVGIAIGYGSPLTLTDTSSKIKKGTKGDATVLMPTLLTAVPAILDRVRDGVFKKVNAAGGLSKKLFYLAYERRLQAINGSWFGAWGLEKALWNFLVFRKVRAILGGRIRFILSGGAPLSGDTQQFINICLGVPIGQGYGLTETCAGGTFSDFDDTSVGRVGPPLPCSFVKLIDWSEGGYLTNDSPMPRGEIVIGGPNVTLGYFKNEEKTKESYKVDEKGMRWFYTGDIGRFHTDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNVMLHADPFHSYCVALVVTSQSTLEEWASKQEIPYSSYSELCSKEESVKEVHASLVKEAKKARLEKFEIPAKIKLLSDPWTPESGLVTAALKIKREVIKKTFQEELVKLYSS 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01041 695 ProSitePatterns Putative AMP-binding domain signature. 253 264 IPR020845 -
Tsu01g01041 695 Gene3D - 49 554 IPR042099 -
Tsu01g01041 695 SUPERFAMILY Acetyl-CoA synthetase-like 54 693 - -
Tsu01g01041 695 Pfam AMP-binding enzyme 98 562 IPR000873 -
Tsu01g01041 695 PANTHER BACTERIAL LONG-CHAIN FATTY ACID COA SYNTHETASE 15 694 - -
Tsu01g01041 695 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 15 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01041 Tsu-Chr1 9577850 9585975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01041 148 694 Acyl Lipid Metabolism Gene Families AT1G77590 79.525 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01041 K01897 - gmx:100803677 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01041 01 9577850 9585975 Tsu01g01041 01 9577850 9585975 ECH