Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01033 ATGAAAAAGGATCTAGCTGGTTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGAGTTTCCACCGCATTAGATAAACTTGCATACATGGAAGAATTGGTAAACGACAAGCTATTACAAGACAGAAGCACGGCTGCAATTGCTGAGCCATTGTCTTCTCCGAGTACTTCTGAAAAATCTGTACATACTGAACGACGAAGGAAGCCGAGGAAAAGCTTGAATGTATCAGGTCCAGTTCAGTCATACCATCCTAATTTAAAGAATTTCTGGTATCCTGTTGCTTTCTCTACTGACTTAAAGGATGATACCATGGTCCCGATGGAATGTTTTGAGGAACCATGGGTTATCTTTAGGGGTAAAGATGGCAAACCTGGATGTGTCCAGAATACCTGTGCACACCGAGCATGTCCCCTGCACCTTGGTTCTGTAAATGAGGGTCGTATCCAATGCCCCTACCACGGCTGGGAATATACGACGGACGGAAAATGTGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAGGGGATGATCTGGATTTGGCCTGGTAATGAACCCCCAACAGCAACAATTCCATCTTTACTACCTCCTTCAGGTTTTGTAGTCCATGCCGAGATTGTCATGGAACTTCCGGTTGAACATGGTTTACTTTTGGACAACCTTTTGGATCTTGCACATGCACCTTTTACTCATACTTCAACATTTGCTAAGGGATGGAGTGTTCCCAGCTTTGTGAATTTTTTGACACCTGCATCTGGCCTACAAGGATATTGGGATCCCTATCCAATTGACATGGAGTTTCGACCACCTTGTATGGTTCTATCAACCATTGGAATTTCGAAGCCCGGGAAACTGGAAGGACAAAGCACCAAAGAATGTGAAACACACCTTCACCAACTGCATGTCTGCTTACCTTCTTCAAAAGATAAAACAAGATTGCTATACAGAATGTCGTTGGATTTCGCTCCCCTTCTTAAGCATATACCTTTTATGGAACATCTATGGAGGCATTTTGCAGCACAGGTTTTAAACGAGGATCTACGACTAGTGGTAGGGCAACAAGAGCGAATGAACAACGGTGCAAACGTATGGAATGTGCCGGTTACCTATGACAAGCTTGGAGTAAGGTATAGACTTTGGAGAGATGCATTGGAAAAAGGAGATAAGCAACTACCCTTCAACACACATAGctaa 1242 0.43 MKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDKLLQDRSTAAIAEPLSSPSTSEKSVHTERRRKPRKSLNVSGPVQSYHPNLKNFWYPVAFSTDLKDDTMVPMECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGNEPPTATIPSLLPPSGFVVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKECETHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHIPFMEHLWRHFAAQVLNEDLRLVVGQQERMNNGANVWNVPVTYDKLGVRYRLWRDALEKGDKQLPFNTHS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01033 413 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 1 410 - -
Tsu01g01033 413 Pfam Rieske [2Fe-2S] domain 96 178 IPR017941 GO:0051537
Tsu01g01033 413 Gene3D - 218 408 - -
Tsu01g01033 413 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 96 196 IPR017941 GO:0051537
Tsu01g01033 413 MobiDBLite consensus disorder prediction 52 85 - -
Tsu01g01033 413 Coils Coil 5 25 - -
Tsu01g01033 413 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 137 159 IPR015881 GO:0005506|GO:0051537
Tsu01g01033 413 Pfam Vanillate O-demethylase oxygenase C-terminal domain 229 253 IPR044043 GO:0016491
Tsu01g01033 413 Pfam Pheophorbide a oxygenase 283 378 IPR013626 GO:0010277
Tsu01g01033 413 CDD Rieske_RO_Alpha_Cao 79 207 - -
Tsu01g01033 413 Gene3D - 90 212 IPR036922 GO:0051537
Tsu01g01033 413 SUPERFAMILY Bet v1-like 192 401 - -
Tsu01g01033 413 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 1 410 - -
Tsu01g01033 413 SUPERFAMILY ISP domain 91 200 IPR036922 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01033 Tsu-Chr1 9487645 9492699 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01033 K13600 - gmx:100820586 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01033 01 9487645 9492699 Tsu01g01033 01 9487645 9492699 ECH