Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01008 ATGATGGTTACTTTCTGTGGTGGTAGTGAAAATTTTGTGGAAAAAATGGTGAAGATGAAAGGTGGTGATGTGAGTGTGATGATCACAGAGTGGAAGGATATTCCAGTTGAacttttgatgaaaattttgtcACTTTTGGATGATGAAATGGTGATTATAGCTTCTCATGTTTGTCATGGTTGGAGAGATGCTATTTCTTTTGGTCTTACTCGTTTATCACTCTCATGGTGTAGCAAGAATATGAATAACTTGGTCCTATCACTTGCTCCGAAGTTCACAACACTACAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAGGCTGTTGCGAAATTCTGCCGTGACCTGCAGATTCTGGACCTCAGCAAAAGTTTCAAGCTTACCGATCGTTCTCTGTATGCTATAGCCCTCGGTTGTCGTGATCTTACAAAACTGAACATTAGTGGCTGTTCAGCTTTTAGTGACAATGCTTTGGCTTATCTAGCCAGTTTATGTAGAAAGCTGAAAATTTTGAATCTGTGTGGTTGTGTTAAAGCTGTATCAGATACTGCATTACAGGCAATTGGACATTACTGCAATGAGTTACAGTCTTTGAACCTTGGATGGTGTGAACAAGTCAGTGATGTTGGAGTGATGAGTTTAGCATATGGATGCCCTGATCTTAGAACACTTGACTTATGTGGTTGTGTCCTTATAACAGATGATAGCGTAATAGCTTTAGCAGATAGGTGTCCTCATCTGAGGTCCCTCGGGCTGTACTTCTGCAAAAACATAACCGACAGAGCAATGTATTCATTGGCACAAAGCAAAGTAAATAACAAGATGTGGGGATCTGTTAATGGTGGAAATGAAGAAGATGGTCTGAGGACTTTGAACATTAGCCAGTGTACATCACTCACCCCTTCTGCTGTTCAAGCTGTTTGTGACTCATCTCCTGCACTTCACACATGCTCAGGTAGACATTCACTCATAATCAGTGGCTGTCTTAACCTTACATCCGTGCACTGTGCATGTTGTGTCCGGCCGCACAATGCTATAAGCCCTTTCCCTCACTCAGCCCATTGA 1083 0.4137 MMVTFCGGSENFVEKMVKMKGGDVSVMITEWKDIPVELLMKILSLLDDEMVIIASHVCHGWRDAISFGLTRLSLSWCSKNMNNLVLSLAPKFTTLQTLILRQDKPQLEDNAVEAVAKFCRDLQILDLSKSFKLTDRSLYAIALGCRDLTKLNISGCSAFSDNALAYLASLCRKLKILNLCGCVKAVSDTALQAIGHYCNELQSLNLGWCEQVSDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIALADRCPHLRSLGLYFCKNITDRAMYSLAQSKVNNKMWGSVNGGNEEDGLRTLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIISGCLNLTSVHCACCVRPHNAISPFPHSAH 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01008 360 Pfam F-box-like 32 65 IPR001810 GO:0005515
Tsu01g01008 360 SUPERFAMILY F-box domain 31 70 IPR036047 GO:0005515
Tsu01g01008 360 Gene3D Ribonuclease Inhibitor 25 287 IPR032675 -
Tsu01g01008 360 SUPERFAMILY RNI-like 66 274 - -
Tsu01g01008 360 SMART LRR_CC_2 198 223 IPR006553 -
Tsu01g01008 360 SMART LRR_CC_2 92 118 IPR006553 -
Tsu01g01008 360 SMART LRR_CC_2 119 144 IPR006553 -
Tsu01g01008 360 SMART LRR_CC_2 171 197 IPR006553 -
Tsu01g01008 360 SMART LRR_CC_2 145 170 IPR006553 -
Tsu01g01008 360 SMART LRR_CC_2 224 249 IPR006553 -
Tsu01g01008 360 SMART LRR_CC_2 291 316 IPR006553 -
Tsu01g01008 360 SMART LRR_CC_2 66 91 IPR006553 -
Tsu01g01008 360 SMART LRR_CC_2 250 275 IPR006553 -
Tsu01g01008 360 PANTHER UNCHARACTERIZED 19 342 - -
Tsu01g01008 360 Pfam Leucine Rich repeat 198 221 IPR001611 GO:0005515
Tsu01g01008 360 Pfam Leucine Rich repeat 224 247 IPR001611 GO:0005515
Tsu01g01008 360 Pfam Leucine Rich repeat 250 273 IPR001611 GO:0005515
Tsu01g01008 360 PANTHER F-BOX SKP2A-LIKE PROTEIN 19 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01008 Tsu-Chr1 9205893 9208866 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01008 K03875 - gmx:100793275 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01008 01 9205893 9208866 Tsu01g01008 01 9205893 9208866 ECH