Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01007 ATGGTGAAGGAAACTGAGTATTACGATATCCTCGGAGTTTCTCCTTCTGCTTCCGATGATCAAATTCGCAAGGCTTATTATCACAAGgCAAAGCAAGTTCATCCTGATCGAAATCAAAACGATCCAAATGCTGCACAAAAGTTTCAGATTTTGGGGGAAGCTTATCAGGTTTTGAGTGATCCGGTACAGAGGAATGGCTATGATCAAAATGGGAAGCATTCTGTATCTAGAGAAACTATGCTTGATCCTATGGCTGTCTTTGCCCTACTCTTTGGAAGTGAATTGTTTGAGGACTACGTTGGACATGTAGCTGTTGCATCGATGGCTGCTTCTGAAGTTGCTGATGAAAGTGAGGATTTGCAGGAAAAGCTAAAGGCTGTCCAGAAAGAAAGGGAAGAAAGGCTAGCAAGATTTTTGAAAGATTTTCTCGGCCAATATGTCCATGGTGACCAAAAGGGCTTCTTCCAGAGAGCAGAATCTGAAGCAAGACGGCTTTCTCATGCAGCCTTTGGAGTTGACATGTTACATACCATCGGCTATATATACTCAAGACAAGCAGCACAAGAGCTAGGGAAAAAGGCCCTTTATCTTGGAGTGCCATTTCTGGCTGAATGGGTTCGCAACAAAGGACATTTTTGGAAATCACAGTTAACAGCTGCTAAAGGCGCTTTTCAGTTGATCCAACTTCAAGAAGAACTCAGCAAGCAATTTAAAACGGGTAGTAGTTGCCCTGAAAATGTTGACTCCCATATCCGTCTTAATAAGGATACTCTGTTGAATTCCTTGTGGAAGTTAAATGTAGTGGACATAGAAGTAACCCTTGCACATGTGTGTCAAATGGTGCTAAAGGAAAACAATGTCAGGAGAGAAGAACTTAAAGTTCGAGCTACGGCTCTTAAAATTCTTGGGAAGATATTTCAGGAAAAGAATGCAAAAGGAGAAACATTGAAGGAGAAACTCGCTGTTGATTCTGATGACGAAGGAAGCAGCTCTGATTCATCGGATGATGAATCACATAGAGCACTTACCTATCGAACTCCTTTTTTCAATCAGGGTATCGGTAGGCTCTTCAAATGCCTTTGTAATCCAGCATTTGAtgtggatgatgatgaagagatAGTTTACAAAGGCAAATGA 1137 0.4072 MVKETEYYDILGVSPSASDDQIRKAYYHKAKQVHPDRNQNDPNAAQKFQILGEAYQVLSDPVQRNGYDQNGKHSVSRETMLDPMAVFALLFGSELFEDYVGHVAVASMAASEVADESEDLQEKLKAVQKEREERLARFLKDFLGQYVHGDQKGFFQRAESEARRLSHAAFGVDMLHTIGYIYSRQAAQELGKKALYLGVPFLAEWVRNKGHFWKSQLTAAKGAFQLIQLQEELSKQFKTGSSCPENVDSHIRLNKDTLLNSLWKLNVVDIEVTLAHVCQMVLKENNVRREELKVRATALKILGKIFQEKNAKGETLKEKLAVDSDDEGSSSDSSDDESHRALTYRTPFFNQGIGRLFKCLCNPAFDVDDDEEIVYKGK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01007 378 CDD DnaJ 6 60 IPR001623 -
Tsu01g01007 378 Pfam X-domain of DnaJ-containing 128 313 IPR026894 -
Tsu01g01007 378 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Tsu01g01007 378 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 361 - -
Tsu01g01007 378 MobiDBLite consensus disorder prediction 317 338 - -
Tsu01g01007 378 Coils Coil 110 137 - -
Tsu01g01007 378 Pfam DnaJ domain 6 68 IPR001623 -
Tsu01g01007 378 SMART dnaj_3 5 63 IPR001623 -
Tsu01g01007 378 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 361 - -
Tsu01g01007 378 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Tsu01g01007 378 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Tsu01g01007 378 PRINTS DnaJ domain signature 8 26 IPR001623 -
Tsu01g01007 378 PRINTS DnaJ domain signature 43 63 IPR001623 -
Tsu01g01007 378 PRINTS DnaJ domain signature 63 82 IPR001623 -
Tsu01g01007 378 PRINTS DnaJ domain signature 26 41 IPR001623 -
Tsu01g01007 378 Gene3D DnaJ domain 1 85 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01007 Tsu-Chr1 9201491 9205554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01007 7 81 Miscellaneous Gene Families AT1G16680 38.961 2.32e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01007 - - gmx:100793811 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01007 01 9201491 9205554 Tsu01g01007 01 9201491 9205554 ECH