Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01006 ATGCACCGATTGACACCGCAGCAAGCAAAGCAAAGTATAAATAAATCTCAACTTTTCTTTGACTTTCGGCAACCTTCCATTACCAAATATACTTTCCTTttccaaattcattcattcaacaCAAAAACACTCAAATCAATGgatgcttcttcttcttcgtcgaCTCACGCTGAATTCGATTACTTGTTCAAGCTTCTTATGATCGGTGATTCTGGAGTTGGCAAAAGCACGCTACTTCTCAGATTCACTTCTGATAATTTCGAAGATCTTTCTCCTACCATCGGTGTAGACTTCAAAGTTAAATATGTTACACTTGGTGGAAAAAAGTTAAAACTTGCTATTTGGGACACAGCTGGACAGGAAAGGTTCAGAACACTTACTGGTTCATATTATAGAGGTGCACAAGGAATAATTATGGTTTATGATGTAACGCGGCGGGACACCTTTACAAATCTATCTGACATATGGGCTAAAGAAATTGACCTGTACTCAACAAATCAAGATTGCATCAAGATGCTTGTAGGAAACAAAGTTGACAAGGAAAGTGAAAGGGTTGTTACCAAAAAGGAAGCGGTGGACTTCGCAAGGCAATATGGATGCCTTTATACTGAATGCAGTGCTAAAACTCGAGTAAATGTTGAACAGTGTTTTGAGGAGCTTGTAATGAAGGTTTTGGATACACCAAGCCTCTTGGCTGAGGGATCATCTGGTGTGAAAAAGAACATCTTCAAGCAGAAACCCCAAGAGTCTGATGCGTCAACTAGTAGCTGTTGCTCATGGTGA 783 0.3768 MHRLTPQQAKQSINKSQLFFDFRQPSITKYTFLFQIHSFNTKTLKSMDASSSSSTHAEFDYLFKLLMIGDSGVGKSTLLLRFTSDNFEDLSPTIGVDFKVKYVTLGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVTKKEAVDFARQYGCLYTECSAKTRVNVEQCFEELVMKVLDTPSLLAEGSSGVKKNIFKQKPQESDASTSSCCSW 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01006 260 PANTHER LD21953P-RELATED 54 259 - -
Tsu01g01006 260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 229 IPR027417 -
Tsu01g01006 260 SMART rho_sub_3 65 227 IPR001806 GO:0003924|GO:0005525
Tsu01g01006 260 CDD Rab18 63 224 - -
Tsu01g01006 260 Gene3D - 56 258 IPR027417 -
Tsu01g01006 260 ProSiteProfiles small GTPase Rho family profile. 56 225 - -
Tsu01g01006 260 ProSiteProfiles small GTPase Rab1 family profile. 58 258 - -
Tsu01g01006 260 SMART arf_sub_2 47 228 - -
Tsu01g01006 260 SMART ras_sub_4 60 227 - -
Tsu01g01006 260 PANTHER BNAA05G18680D PROTEIN 54 259 - -
Tsu01g01006 260 SMART rab_sub_5 63 227 - -
Tsu01g01006 260 ProSiteProfiles small GTPase Ras family profile. 52 260 IPR001806 GO:0003924|GO:0005525
Tsu01g01006 260 Pfam Ras family 64 225 IPR001806 GO:0003924|GO:0005525
Tsu01g01006 260 PRINTS Transforming protein P21 ras signature 202 224 - -
Tsu01g01006 260 PRINTS Transforming protein P21 ras signature 85 101 - -
Tsu01g01006 260 PRINTS Transforming protein P21 ras signature 167 180 - -
Tsu01g01006 260 PRINTS Transforming protein P21 ras signature 63 84 - -
Tsu01g01006 260 PRINTS Transforming protein P21 ras signature 103 125 - -
Tsu01g01006 260 TIGRFAM small_GTP: small GTP-binding protein domain 61 219 IPR005225 GO:0005525
Tsu01g01006 260 SMART ran_sub_2 68 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01006 Tsu-Chr1 9195045 9200110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01006 64 217 EF-hand Containing Proteins AT5G27540 22.785 2.52e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01006 K07910 - gmx:121173094 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01006 01 9195045 9200110 Tsu01g01006 01 9195045 9200110 ECH