Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00993 atgGTGACAGGACAAGATTTATACAACGTGATGTGTTCAATGGTACCTCTATATTTTGCAATGCTAGTTGCTTACGGTTCAGTAAAGTGTTGCAAAATGTTCACTTCAGATCAATGTTCAGGCATAAACAGATTTGTGGCAGTTTTTGCTGTTCCAGTTCtatcttttcattttatttctctCAACAATCCTTATCAAATGGACATAAAATTCATCTTAGCAGATACAATTTCTAAGCTTAttgttctcttttttctttctatttggGCTATTTTCTTTACTAAAGGCTCATTGGATTGGGCTATTACTTTGTTCTCAGTTGCTACTTTGCCTAATACCCTTGTTATGGGTATCCCTTTACTTCAAGCTATGTATGGTGATTTCACTCAAAGTCTCATGGTGCAACTAGTTGTCCTTCAATGCATCATATGGTATACTCTGCTTCTCTTCCTATTAGAATATAGAGCAGCCAAACTCTTGATCAAAAACTCATTCCCAGGAACCACAGCAACCTCGATAACAAAATTCGAACTCGACAGCGACGTAATTTCCCTCTACGGCCAAGATGCGCCGCTCACAACCCAATCAGAAACCGATGAAAACGGACGAATCAAAGTTCGAATTCGACGATCCATTTCCTCAGCACCACCAGGATCAACCTCATCAATAACCAACACAATTACTCCTACAAGACTATCTAATCTTTCCAATGCCGACATTTTCTCCATCAACACACCGATGAATTTTCTCGACAATGCTAGTCCGCGTCTCTCCGGTTATGCGTCGACCGATGCTTATTCGTTACAGCCAACGCCTCGAGGGTCTAATGTTAATGAAATGGATGTGATTGGTACGCCGGTGTTGGGGAGGTCGCCGGTGGGTGGAGGGAGGGGATTACGGGGGAATTCGCCGGTGGTGGATCGAGGGAGAGTGGTTTGGGATTCGCCGGAGAAATGGAGGGTTGAAGAGAGACAAGGATGCAAGGACATTACTATGTCAGATAAGGAAATTAGCTTCAGAGACAGCCTCAAAGTCTCAGTAGCAGGGGAAGCTGTGGACCATAAGAGTAACCAGAAAATGCCATATGCCTTTGTAATGTTAAGGCTTATACTTATTGTAGTTGGAAGAAAACTTTCTCGTAATCCTAATACTTATTCTAGTCTTTTAGGACTTCTCTGGTCTCTAATCTCCTTCAAATGGAATATAGAAATGCCTAGTTTGATCAAATCATCTATCAAAATCATATCTGATGCAGGTCTTGGGATGGCAATGTTTAGCTTAGGGCTTTTCATGGCACTTCAGCCTCGTATTATTGCTTGTGGTACTAAAAGAGCAGCCATGGGAATGGCCATCAGATTCCTATGTGGTCCTCTTGTAATGTCATTATCATCCATTGCCATTGGATTGAGAGGAAAGAAACTGCATACAGCCATTGTACAGGCTGCTCTTCCACAAGGGATAGTGCCATTTGTATTTGCAAGAGAATATGGGCTGCATCCTGATATTTTGAGTACAGGggtaATATTTGGAATGTTAGTTTCCTTGCCAATAACTCTCATTTACTACATATTTCTTGGCTTGTga 1584 0.4047 MVTGQDLYNVMCSMVPLYFAMLVAYGSVKCCKMFTSDQCSGINRFVAVFAVPVLSFHFISLNNPYQMDIKFILADTISKLIVLFFLSIWAIFFTKGSLDWAITLFSVATLPNTLVMGIPLLQAMYGDFTQSLMVQLVVLQCIIWYTLLLFLLEYRAAKLLIKNSFPGTTATSITKFELDSDVISLYGQDAPLTTQSETDENGRIKVRIRRSISSAPPGSTSSITNTITPTRLSNLSNADIFSINTPMNFLDNASPRLSGYASTDAYSLQPTPRGSNVNEMDVIGTPVLGRSPVGGGRGLRGNSPVVDRGRVVWDSPEKWRVEERQGCKDITMSDKEISFRDSLKVSVAGEAVDHKSNQKMPYAFVMLRLILIVVGRKLSRNPNTYSSLLGLLWSLISFKWNIEMPSLIKSSIKIISDAGLGMAMFSLGLFMALQPRIIACGTKRAAMGMAIRFLCGPLVMSLSSIAIGLRGKKLHTAIVQAALPQGIVPFVFAREYGLHPDILSTGVIFGMLVSLPITLIYYIFLGL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00993 527 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 527 - -
Tsu01g00993 527 TIGRFAM 2a69: auxin efflux carrier 1 527 IPR014024 -
Tsu01g00993 527 PANTHER AUXIN EFFLUX CARRIER COMPONENT 6 1 527 - -
Tsu01g00993 527 Pfam Membrane transport protein 10 522 IPR004776 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00993 Tsu-Chr1 9089627 9098346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00993 1 505 Organic Solute Cotransporters AT1G77110 61.634 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00993 K13947 - gmx:100800139 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00993 01 9089627 9098346 Tsu01g00993 01 9089627 9098346 ECH