Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00900 atgGCGATTCCTTCTCTCGACGAAGAAACCACCAAGAAAGTCATACGACAGGTTGAGTTTTATTTCAGTGATAGTAATCTTCCTAGAGATGATTTCTTGCGTAAAACCGTTACTGAAAGTGAAGATGGAATGGTTAGTTTGGCTTTGATTTGTTCTTTTAATCGGATGCGAAAGCATCTTAATTTGGGGGATATTAAGCCTGATGAAGTTAAGGAAGAAACTGTCAAAGCTGTTGctgaagttttgaaaaatgctgcTACACTCAAGCTTTCAGAAGATGGGAGCAAAGTTGGAAGGAATACTGAACTTTCCAAGCCAGAAGTGGTAATTGAGCAGGTTGAGATAAGAACAATTGCTGCATCACCATTTGAATATACTGTGAAGCTTGAAGAAGTAGAGTCATTCTTTGGTCAATATGCCAAGATCAACAGTGTGCGGTTGCCCCGTCATGTTGGAGACAAAAGATTCTTCTGTGGTACTGCCCTTGTTGAGTTCTCATCAgaggaagaaatggaaaatgttTTGAAGCAAAAATTGGTGTATGCGGGTGCTGAGCTAGAATTAAAGCCAAAAAAGGACTTTGATgcagaaagagaaaaagaattaGAAAAGCATGCAAAGTATCATAAACCTGCAGATTCAAACCATGAGGATAACACAAATTCAGAAGAAGACTACCCTACAGGCTTAATTATAGCCTTCAAACTTAAGAGCAGTTCAGATGAAGTTCCTTCAGAAAAGAATAGCACCGAACAACAAGCCAATGGAAATAATGGTGTCACCAAGACAGACGAACAAAAGCCCTCTGAAGTTGCTGCTGAGGAAAATGATCAAAAGATGTCCGAAGATAATGACaatgataaagaaaacaatggTGTGAACGAAGCAAAGGAGGTTGAAGgcgaagaaaaggaaaaagaaaacaatggGGTGAAAGAAGTAAAGGAGGCTGAAGTTGAAGAAAAGGACCAAGAAAACAATGGGGTTAACGAAGGAAAGGCGGCTGATGCTGAAGAAAAGAAGGGTCAGGAAACTGAAAAAAAAACAGCTGCTTCTTTCAAGAGCAACTCTGATGTTGTCTTACGTGAGGATTTGAAGGCTGTCTTCCAGAAGTTTGGTGACGTTAAGTACATAGATTTCAATATGGGAGATGACTCAGGATTCATTCGGTTTGATGAACCTCAAGCCGCTGAGAAAGCACGCACTGCTGCAGCTCTTTCTGAAAACGCGGGCTTAGTTGTAAAGAATTTTATTGCTATTCTAGATCCAGTGACCGGTGAGGCTGAAAAAGAATACTGGAGCAAGCTTCGTGGTAAGCAAGATCAGCGCAGAGAAAGCTTTAGTAACCGAGGAAGGGGAGGAAGGCATGGTAGAGGAGGGAAACATTTCCGGCATAGAGATAATGATTCTGGAGGAGGTCGCCcaaataaatttagaaaatttatgTCGCGGGGTTAG 1458 0.3813 MAIPSLDEETTKKVIRQVEFYFSDSNLPRDDFLRKTVTESEDGMVSLALICSFNRMRKHLNLGDIKPDEVKEETVKAVAEVLKNAATLKLSEDGSKVGRNTELSKPEVVIEQVEIRTIAASPFEYTVKLEEVESFFGQYAKINSVRLPRHVGDKRFFCGTALVEFSSEEEMENVLKQKLVYAGAELELKPKKDFDAEREKELEKHAKYHKPADSNHEDNTNSEEDYPTGLIIAFKLKSSSDEVPSEKNSTEQQANGNNGVTKTDEQKPSEVAAEENDQKMSEDNDNDKENNGVNEAKEVEGEEKEKENNGVKEVKEAEVEEKDQENNGVNEGKAADAEEKKGQETEKKTAASFKSNSDVVLREDLKAVFQKFGDVKYIDFNMGDDSGFIRFDEPQAAEKARTAAALSENAGLVVKNFIAILDPVTGEAEKEYWSKLRGKQDQRRESFSNRGRGGRHGRGGKHFRHRDNDSGGGRPNKFRKFMSRG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00900 485 MobiDBLite consensus disorder prediction 267 348 - -
Tsu01g00900 485 MobiDBLite consensus disorder prediction 243 265 - -
Tsu01g00900 485 CDD LA_like_plant 10 99 - -
Tsu01g00900 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 177 IPR000504 GO:0003723
Tsu01g00900 485 PANTHER BNAANNG34180D PROTEIN 2 283 - -
Tsu01g00900 485 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Tsu01g00900 485 MobiDBLite consensus disorder prediction 197 226 - -
Tsu01g00900 485 ProSiteProfiles xRRM domain profile. 344 469 IPR014886 GO:0003723
Tsu01g00900 485 PANTHER BNAANNG34180D PROTEIN 292 480 - -
Tsu01g00900 485 Gene3D - 6 106 IPR036388 -
Tsu01g00900 485 Gene3D - 332 452 IPR012677 -
Tsu01g00900 485 Pfam RNA binding motif 356 452 IPR014886 GO:0003723
Tsu01g00900 485 MobiDBLite consensus disorder prediction 197 223 - -
Tsu01g00900 485 PANTHER LUPUS LA PROTEIN-RELATED 292 480 IPR045180 -
Tsu01g00900 485 PANTHER LUPUS LA PROTEIN-RELATED 2 283 IPR045180 -
Tsu01g00900 485 MobiDBLite consensus disorder prediction 433 485 - -
Tsu01g00900 485 SMART la 8 100 IPR006630 -
Tsu01g00900 485 Pfam La domain 14 84 IPR006630 -
Tsu01g00900 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Tsu01g00900 485 MobiDBLite consensus disorder prediction 433 452 - -
Tsu01g00900 485 Gene3D - 107 207 IPR012677 -
Tsu01g00900 485 SUPERFAMILY RNA-binding domain, RBD 116 403 IPR035979 GO:0003676
Tsu01g00900 485 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Tsu01g00900 485 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Tsu01g00900 485 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Tsu01g00900 485 MobiDBLite consensus disorder prediction 239 355 - -
Tsu01g00900 485 SUPERFAMILY "Winged helix" DNA-binding domain 6 102 IPR036390 -
Tsu01g00900 485 SMART rrm1_1 117 189 IPR000504 GO:0003723
Tsu01g00900 485 SMART rrm1_1 355 415 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00900 Tsu-Chr1 8220447 8224709 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00900 K11090 - gmx:100803099 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00900 01 8220447 8224709 Tsu01g00900 01 8220447 8224709 ECH